View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2773_high_1 (Length: 328)

Name: NF2773_high_1
Description: NF2773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2773_high_1
NF2773_high_1
[»] chr8 (7 HSPs)
chr8 (1-311)||(16052447-16052757)
chr8 (7-243)||(24119934-24120170)
chr8 (22-310)||(28901531-28901817)
chr8 (8-311)||(22894711-22895012)
chr8 (1-232)||(5570318-5570548)
chr8 (8-45)||(17970591-17970628)
chr8 (8-44)||(29765361-29765397)
[»] chr7 (8 HSPs)
chr7 (8-311)||(21471432-21471735)
chr7 (184-311)||(5722037-5722164)
chr7 (9-92)||(7494565-7494648)
chr7 (7-90)||(20470986-20471070)
chr7 (203-307)||(7955832-7955936)
chr7 (262-307)||(1074108-1074153)
chr7 (16-84)||(7956047-7956115)
chr7 (8-44)||(39270243-39270279)
[»] chr1 (7 HSPs)
chr1 (1-136)||(23223221-23223356)
chr1 (8-173)||(30675255-30675421)
chr1 (264-311)||(23223173-23223220)
chr1 (247-311)||(14397291-14397355)
chr1 (8-232)||(21451992-21452216)
chr1 (16-84)||(31313414-31313482)
chr1 (267-311)||(31313053-31313097)
[»] chr4 (3 HSPs)
chr4 (9-283)||(1696745-1697017)
chr4 (7-84)||(1676471-1676548)
chr4 (7-84)||(1682999-1683076)
[»] chr2 (7 HSPs)
chr2 (8-232)||(28278599-28278820)
chr2 (145-311)||(22389067-22389231)
chr2 (1-84)||(39730309-39730392)
chr2 (163-311)||(29769361-29769510)
chr2 (184-303)||(39730134-39730255)
chr2 (9-84)||(32276691-32276766)
chr2 (8-44)||(25886161-25886197)
[»] chr5 (7 HSPs)
chr5 (184-311)||(22754591-22754718)
chr5 (141-311)||(17027171-17027341)
chr5 (111-311)||(11274630-11274829)
chr5 (117-309)||(23125225-23125418)
chr5 (146-311)||(24841399-24841563)
chr5 (186-309)||(19331207-19331330)
chr5 (8-44)||(20548423-20548459)
[»] chr3 (4 HSPs)
chr3 (183-311)||(11520775-11520903)
chr3 (11-94)||(21017728-21017811)
chr3 (6-92)||(13911119-13911205)
chr3 (8-44)||(16223572-16223608)
[»] chr6 (5 HSPs)
chr6 (144-311)||(15576405-15576571)
chr6 (184-311)||(16526967-16527093)
chr6 (185-311)||(12972738-12972863)
chr6 (183-311)||(15574578-15574706)
chr6 (136-232)||(17860716-17860812)
[»] scaffold0282 (1 HSPs)
scaffold0282 (9-92)||(22723-22806)
[»] scaffold1026 (1 HSPs)
scaffold1026 (189-311)||(2186-2308)
[»] scaffold0072 (1 HSPs)
scaffold0072 (8-44)||(38382-38418)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 16052447 - 16052757
Alignment:
Q  1 atgccccgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaat 100  Q
    |||| ||||||||| ||||| ||||||||| | |   |||||||| |||| | |||||||||||||||| |||||||||||||| |||||||||| | ||    
T  16052447 atgctccgtcatcacaaccctaaacttaaactctcgtttgtccttttgcagcacaatagcaagaagttagaatttacatgaatttaaagaataagaacat 16052546  T
Q  101 acctttatgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactc 200  Q
    || |||  | |||| | ||| | |||| || ||||||||||| || |||||||||| |||| ||||| ||||| |||||||  ||||| |||  ||| ||    
T  16052547 actttttcggagatttggctcagattgccactcttcccatcatcaaacttaactagcttaccacttctatgcaagctgaacagacttaaagagtatattc 16052646  T
Q  201 gtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattg 300  Q
     |||||||||||||||| |||||||| ||||  | |||||||| | ||||  | ||||| |||||||||||||||||||||| || ||||||||||||||    
T  16052647 ttactttcaaccacatacaattccaagatacgcgtatgtacctcctaaagctagtggggttggtcaaggcatttgccacacttcaatcgtcatgtgattg 16052746  T
Q  301 taccttgctat 311  Q
    |||||||||||    
T  16052747 taccttgctat 16052757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 24120170 - 24119934
Alignment:
Q  7 cgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaataccttt 106  Q
    |||||||| |||||| ||  |||| |||| |||||||| |  |||| ||||||||| ||||||  ||||||||||||| ||||||||   | |||| |||    
T  24120170 cgtcatcacaacccccaaaataaaatgttgcttgtcctcaatcaacacaatagcaataagttaggatttacatgaatttaaagaatataaacatacattt 24120071  T
Q  107 atgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactt 206  Q
     || |||| | ||| | ||||||| |||| ||| || |||  |||||||| |||| ||||||||||| || ||||  ||| ||||||||||||| |||||    
T  24120070 ttggagatttggctcagattgtcactctttccaccaacaggtttaactagcttaccacttccatgcaagcagaacagactaagagaagatactcttactt 24119971  T
Q  207 tcaaccacatataattccaaaatacatgcatgtacct 243  Q
    | ||| |||||||||||||| ||||| | ||||||||    
T  24119970 taaacgacatataattccaagatacacgtatgtacct 24119934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 28901531 - 28901817
Alignment:
Q  22 aaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaatacctttatgaagatgttgctt 121  Q
    |||||||||| ||| ||||| || | ||||| || ||||||||||||| |||||||||||||| ||||||| |  | ||| |||| |  |||| || ||     
T  28901531 aaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaagaatgaa-acatatctttctagagatttt-cta 28901628  T
Q  122 atattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttcaaccacatataat 221  Q
    | |||||||||| || ||  | || |||| ||||| |||| || | ||||||    |||| | |||||||||||||||| |||||||||||||||| |||    
T  28901629 agattgtcattcctctcactatcatacttgactagcttaccacatacatgcaactagaacaagcttagagaagatactcttactttcaaccacatacaat 28901728  T
Q  222 tccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgcta 310  Q
    ||||| ||||| | ||||| || | |||  || ||||| ||||||||| ||||| ||| |    ||||||||||||||||| |||||||    
T  28901729 tccaagatacacgtatgtatctcctaaaaccattggggttggtcaaggaatttgtcactcgtttgtcgtcatgtgattgtatcttgcta 28901817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 22894711 - 22895012
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaataccttta 107  Q
    ||||||| || | |||||||||| |||  |||||||| | | ||| |||||||||||| ||| ||||||| |||||| ||| ||| |  | ||||||||     
T  22894711 gtcatcacaatctcaaacttaaactgtcccttgtcctcaagaaacacaatagcaagaaattataatttacgtgaatttaaataatgaa-acatacctttc 22894809  T
Q  108 tgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtacttt 207  Q
     |||||| |||||   | |||  ||| ||||| || || |||| ||||| || |||||||||| || || ||||   ||||||||| |||||  | ||||    
T  22894810 cgaagat-ttgctcgaactgtacttcctcccagcatcatacttgactagctttctacttccatacaagcggaacatgcttagagaatatacttcttcttt 22894908  T
Q  208 caaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttg 307  Q
    |||||||||| |||||||| | ||| | ||||| || | ||||  | || |||| ||||||||||||||||||||||||| ||| | ||||||||||||     
T  22894909 caaccacatacaattccaagacacacgtatgtatctcctaaagctagtgaggctagtcaaggcatttgccacactccagttgtcgtatgattgtaccttt 22895008  T
Q  308 ctat 311  Q
    ||||    
T  22895009 ctat 22895012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5570318 - 5570548
Alignment:
Q  1 atgccccgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaat 100  Q
    |||| |||| |||| |||||||||||||||||||| ||||| || |  |||| |||||  ||||||||| | |||||||||||| ||||||||   | ||    
T  5570318 atgctccgttatcacaaccccaaacttaaattgttgcttgtactcaaacaacacaataataagaagttatattttacatgaatttaaagaatagaaacat 5570417  T
Q  101 acctttatgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactc 200  Q
    ||||||   ||||| ||||| | ||||||| | |||||| ||||   ||||||||| |||| ||| ||| ||| ||   ||  ||||| | ||||||||     
T  5570418 acctttccaaagattttgctgagattgtcacttttcccaccaccgtgcttaactagcttaccactaccacgcaagcgatacagactta-aaaagatacta 5570516  T
Q  201 gtactttcaaccacatataattccaaaataca 232  Q
     |||||||||||||||| |||| ||| |||||    
T  5570517 ttactttcaaccacatacaatttcaagataca 5570548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 17970591 - 17970628
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtcctt 45  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  17970591 gtcatcacaaccccaaacttaaattgttgcttgtcctt 17970628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 29765397 - 29765361
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtcct 44  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  29765397 gtcatcacaaccccaaacttaaattgttgcttgtcct 29765361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 21471735 - 21471432
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt-aaaagaataaggaaataccttt 106  Q
    ||||||| ||||||||||||||| ||||  ||||||| | ||||  ||||||| ||||||||||||| ||||||||| ||||||||||  | ||||||||    
T  21471735 gtcatcacaaccccaaacttaaactgttgattgtcctcaagcaatacaatagctagaagttaaaattaacatgaatttaaaagaataaa-acataccttt 21471637  T
Q  107 atgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactt 206  Q
      ||||   ||||| | |||||||||| |||||  | || |||| ||||| |||| || | |||||| |  || | |||||||||| ||||||| |||||    
T  21471636 ccgaaggctttgctcagattgtcattcctcccactatcaaacttgactagcttaccaccttcatgcaagtggatcaaacttagagaggatactcttactt 21471537  T
Q  207 tcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtacctt 306  Q
    |||||||| || |||||||| ||||||| ||||  || | |||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21471536 tcaaccacgtacaattccaagatacatgtatgtgtctcctaaatccaatggggctggtcaaggcatttgccatactccagtcgtcatgtgattgtacctt 21471437  T
Q  307 gctat 311  Q
    |||||    
T  21471436 gctat 21471432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 5722164 - 5722037
Alignment:
Q  184 acttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactc 283  Q
    ||||||||||||||||| | ||||||||||| || |||||||| ||||| | ||||| || | |||| || ||||| |||  |||  ||||| |||||||    
T  5722164 acttagagaagatactcttgctttcaaccacttacaattccaagatacacgtatgtatctcctaaagtcagtggggatgggaaagaaatttgtcacactc 5722065  T
Q  284 cagtcgtcatgtgattgtaccttgctat 311  Q
    |||| ||||| |||||||| ||||||||    
T  5722064 cagtagtcatttgattgtatcttgctat 5722037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 7494648 - 7494565
Alignment:
Q  9 tcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaat 92  Q
    |||||| |||| |||||||||| |||| |||||||| | ||||| |||||||||||||| | |||||||||||||| |||||||    
T  7494648 tcatcacaaccacaaacttaaactgttgcttgtcctcaagcaacacaatagcaagaagtcagaatttacatgaatttaaagaat 7494565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 20470986 - 20471070
Alignment:
Q  7 cgtcatcaaaaccccaaacttaaattgttt-cttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaaga 90  Q
    |||||||| |||||||||||||||||||||  ||||||| | ||||| | |||||||||||||| ||||||||| |||| |||||    
T  20470986 cgtcatcacaaccccaaacttaaattgtttgtttgtcctcaagcaacacgatagcaagaagttataatttacataaatttaaaga 20471070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 7955936 - 7955832
Alignment:
Q  203 actttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgta 302  Q
    |||||||| ||| || |||||||| ||||| |  ||||||| | |||  |||  |||||  |||||||||||||| |||||||||| |||||||||||||    
T  7955936 actttcaagcacttacaattccaagatacacgtgtgtacctcctaaattcaacagggcttctcaaggcatttgccccactccagtcatcatgtgattgta 7955837  T
Q  303 ccttg 307  Q
    |||||    
T  7955836 ccttg 7955832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 1074153 - 1074108
Alignment:
Q  262 ggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttg 307  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||    
T  1074153 ggtctaggcattttccacactccagacgtcatgtgattgtaccttg 1074108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7956115 - 7956047
Alignment:
Q  16 aaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt 84  Q
    |||||||||||||||| |||||||||||| | |||||  |||| ||||| | || ||||||||| ||||    
T  7956115 aaccccaaacttaaatcgtttcttgtcctgaagcaacaaaatatcaagacggtagaatttacataaatt 7956047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 39270279 - 39270243
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtcct 44  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  39270279 gtcatcacaaccccaaacttaaattgttgcttgtcct 39270243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 23223356 - 23223221
Alignment:
Q  1 atgccccgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaat 100  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  23223356 atgctccgtcatcacaaccccaaacttaaattgtttcttgtccttaagcaacacaatagaaagaagttagaatttacatgaatttaaagaataagaaaat 23223257  T
Q  101 acctttatgaagatgttgcttatattgtcattcttc 136  Q
    ||||||||||||||||||||||||| ||||||||||    
T  23223256 acctttatgaagatgttgcttatatagtcattcttc 23223221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 30675421 - 30675255
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt--aaaagaataaggaaatacctt 105  Q
    ||||||| ||| || ||||||||  ||| |||||||| | ||||  | |||||||||||||||||||||||||||||  |||||||| |||| ||||||     
T  30675421 gtcatcacaacaccgaacttaaacagttgcttgtcctcaagcaaaactatagcaagaagttaaaatttacatgaatttgaaaagaat-aggacatacctg 30675323  T
Q  106 tatgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgca 173  Q
    | ||||||| ||||| | |||||||||||||||| || || |||||||||  |||| ||||| |||||    
T  30675322 tttgaagattttgctcagattgtcattcttcccaccatcaaacttaactaacttaccacttctatgca 30675255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 23223220 - 23223173
Alignment:
Q  264 tcaaggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  23223220 tcaaggcatttgccacactccaatcgtcatgtgattgtaccttgctat 23223173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 14397355 - 14397291
Alignment:
Q  247 aaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
    |||| ||||| | |||||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  14397355 aaagccaatgagactggtcaaggtatttgccacactaccgtcgtcatgtgattgtaccttgctat 14397291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 21451992 - 21452216
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaa-ataccttt 106  Q
    ||||||| ||||||||||||||| | || |||||||| | | ||| |||||||||||||||| |||| |||| |||||||  || |   || ||||||||    
T  21451992 gtcatcacaaccccaaacttaaactattacttgtcctcaagaaacacaatagcaagaagttagaattcacataaattaaataaaaatcaaacataccttt 21452091  T
Q  107 atgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactt 206  Q
      || | | ||||| | ||| |||||| |||||  | || |||| ||||| |||| || |||||||| || || | || ||||||| ||||||| |||||    
T  21452092 cggaggct-ttgctcagattttcattcctcccactatcaaacttgactaggttaccacctccatgcaagcagatcaaatttagagaggatactcttactt 21452190  T
Q  207 tcaaccacatataattccaaaataca 232  Q
    ||||||||||| ||||| || |||||    
T  21452191 tcaaccacatacaattcaaagataca 21452216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 31313482 - 31313414
Alignment:
Q  16 aaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt 84  Q
    ||||||||||||||| |||| |||||||| | |||||  ||||||||||| ||| ||||||||||||||    
T  31313482 aaccccaaacttaaactgttgcttgtcctcaggcaacaaaatagcaagaaattagaatttacatgaatt 31313414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 31313097 - 31313053
Alignment:
Q  267 aggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||    
T  31313097 aggcatttgccacactccaatcgtgatgttattgtaccttgctat 31313053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 1696745 - 1697017
Alignment:
Q  9 tcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaatacctttat 108  Q
    |||||| |||| |||||||||| |||| ||| || | | ||||| || ||||||||||||| |||||||||||||| | | |||||  | |||||||| |    
T  1696745 tcatcacaacctcaaacttaaactgttgcttatcttcaagcaacacagtagcaagaagttagaatttacatgaatttataaaataaa-atatacctttct 1696843  T
Q  109 gaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttc 208  Q
    | || | ||||| | |||||||||| || ||    || |||| |||||  ||| ||||||||||| || |||| |||||||||| ||||||  |||||||    
T  1696844 ggaggt-ttgctgagattgtcattcctctcactgtcaaacttgactagcataccacttccatgcaagcagaacaaacttagagaggatacttttactttc 1696942  T
Q  209 aaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactc 283  Q
    ||||||||| |||||||| |||||   |||||||||| |||| || |||||||||||||||||||||||||||||    
T  1696943 aaccacatacaattccaagatacacatatgtaccttctaaagccagtggggctggtcaaggcatttgccacactc 1697017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 1676471 - 1676548
Alignment:
Q  7 cgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt 84  Q
    |||||||| ||||||||||||||| |||| | |||| | | ||||| || ||||||||||||| ||||||||||||||    
T  1676471 cgtcatcacaaccccaaacttaaactgttgcatgtcttcaagcaacacagtagcaagaagttagaatttacatgaatt 1676548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 1682999 - 1683076
Alignment:
Q  7 cgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt 84  Q
    |||||||| ||||||||||||||| |||| | |||| | | ||||| || ||||||||||||| ||||||||||||||    
T  1682999 cgtcatcacaaccccaaacttaaactgttgcatgtcttcaagcaacacagtagcaagaagttagaatttacatgaatt 1683076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 28278599 - 28278820
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataaggaaataccttta 107  Q
    ||||||| ||||| ||||||||| |||| |||||||| | ||||| |||||||||||||||| |||||||||||||| ||| ||| ||   ||||||||     
T  28278599 gtcatcacaacccaaaacttaaagtgttgcttgtcctcaagcaacacaatagcaagaagttagaatttacatgaatttaaataat-agagcatacctttc 28278697  T
Q  108 tgaagatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtacttt 207  Q
    |  |||| ||||| |||||||||||| |||||  | |||| || ||||| |||| ||||||||||| ||  ||| || ||||||||||||||| ||||||    
T  28278698 tagagat-ttgctcatattgtcattc-tcccactatcagatttgactagtttaccacttccatgcaagcgaaacaaagttagagaagatactcttacttt 28278795  T
Q  208 caaccacatataattccaaaataca 232  Q
     ||||||||| |||||||| |||||    
T  28278796 taaccacatagaattccaagataca 28278820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 311
Target Start/End: Original strand, 22389067 - 22389231
Alignment:
Q  145 agacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtacctt 244  Q
    |||||| ||||  |||| || |||||||| || |||||  ||| |||||||||||| ||| || | |||| || ||||||||  |||| |  |||||||     
T  22389067 agacttgactaacttaccacatccatgcaagcggaacgtgctttgagaagatactcttacgttga-ccacttacaattccaagctacaggattgtacctc 22389165  T
Q  245 cgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
    | ||||  | || |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  22389166 ctaaaggtagtgaggctggtcaaggtatttgccacac-ccagtcgtcatgtgactgtaccttgctat 22389231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39730392 - 39730309
Alignment:
Q  1 atgccccgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt 84  Q
    |||| ||| ||||| ||||||||||||||| ||||  ||||||| | |||||  ||||||||||||||| |||||| |||||||    
T  39730392 atgctccgccatcacaaccccaaacttaaaatgttatttgtcctcaagcaacaaaatagcaagaagttataatttatatgaatt 39730309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 29769510 - 29769361
Alignment:
Q  163 acttccatgcatgctgaacgaacttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggc-t 261  Q
    ||||||||||| || | ||  ||||| |||| | |||| |||||||||| ||||  |||||||||| ||||| ||||| || | |||  || |||||| |    
T  29769510 acttccatgcaagcgggacagacttaaagaacacactcatactttcaactacattcaattccaaaacacatgtatgtatctcctaaaatcagtggggcct 29769411  T
Q  262 ggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
    ||| || | ||||| ||||||| |||| ||||||| ||||||||||||||    
T  29769410 ggtaaatgaatttgtcacactctagtcctcatgtgtttgtaccttgctat 29769361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 303
Target Start/End: Complemental strand, 39730255 - 39730134
Alignment:
Q  184 acttagagaagatactcgtactttcaaccacatat---aattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccaca 280  Q
    ||||||||||||||||  || ||||||| || |||   |||| ||| ||||||| |||||||| | |||| || || | |||||||||| ||||||||||    
T  39730255 acttagagaagatacttttaatttcaacaacttattacaatttcaagatacatgtatgtacctcctaaagccagtgag-ctggtcaaggtatttgccaca 39730157  T
Q  281 ctccagtcgtcatgtgattgtac 303  Q
    ||| |||| || |||||||||||    
T  39730156 ctcaagtcatcgtgtgattgtac 39730134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 32276691 - 32276766
Alignment:
Q  9 tcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaatt 84  Q
    |||||| |||||||||||||||  |||||||||||||| |||||  |||| |||||| |||   ||||||||||||    
T  32276691 tcatcacaaccccaaacttaaacggtttcttgtccttacgcaacaaaataacaagaacttagggtttacatgaatt 32276766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 25886197 - 25886161
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtcct 44  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  25886197 gtcatcacaaccccaaacttaaattgttgcttgtcct 25886161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 22754718 - 22754591
Alignment:
Q  184 acttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactc 283  Q
    ||||||||| |||| || |||||||||||| |||  ||||||| ||||| | |||||||| | |||| |||| ||| ||||||| |||||||||||||||    
T  22754718 acttagagaggatattcttactttcaaccatataatattccaagatacacgtatgtacctcctaaagtcaatagggttggtcaaagcatttgccacactc 22754619  T
Q  284 cagtcgtcatgtgattgtaccttgctat 311  Q
    ||||||||||||||||||||||||||||    
T  22754618 cagtcgtcatgtgattgtaccttgctat 22754591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 141 - 311
Target Start/End: Complemental strand, 17027341 - 17027171
Alignment:
Q  141 caccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgta 240  Q
    |||||||||||||||| |||  || |||||||| || ||||  | ||||||||||||||| || |||||||||| || |||||||| ||||||| |||||    
T  17027341 caccagacttaactagcttataacatccatgcaagcggaacacagttagagaagatactcttattttcaaccacgtacaattccaagatacatgtatgta 17027242  T
Q  241 ccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
    ||| | ||||  | |||||||| |||| ||||||| || |||||||||||||||||||||| |||| ||||    
T  17027241 cctcctaaagctagtggggctgatcaatgcatttgtcatactccagtcgtcatgtgattgttccttcctat 17027171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 311
Target Start/End: Original strand, 11274630 - 11274829
Alignment:
Q  111 agatgttgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttcaa 210  Q
    |||| ||||| |||||||||||||| ||| || ||||||||||||| ||||| ||| |||||| || ||||  |||| |||||||||||  |||||||||    
T  11274630 agattttgctcatattgtcattctttccaccatcagacttaactagcttactgctttcatgcaagcagaacagactttgagaagatacttttactttcaa 11274729  T
Q  211 ccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgcta 310  Q
    ||||||| |||||||| |||||   | ||| || | |||| | | |||| |||||||||| |||| ||||||| ||| ||||||||||| |||||| |||    
T  11274730 ccacatacaattccaagatacacataggtatctcctaaag-ccagggggatggtcaaggcgtttgtcacactctagttgtcatgtgattttaccttacta 11274828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 309
Target Start/End: Original strand, 23125225 - 23125418
Alignment:
Q  117 tgcttatattgtcattcttcccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgt-actttcaaccaca 215  Q
    |||| ||||||||||||||||||   |||||||| ||||  |||| ||||||||||| || | || | |||||||||||||||  | |||| ||| |||     
T  23125225 tgctcatattgtcattcttcccacttccagacttgactaacttaccacttccatgcaagcgggacaagcttagagaagatacttattacttccaatcact 23125324  T
Q  216 tataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgct 309  Q
    || |||||||| |||||   ||||||||   ||||| | ||||| ||||||||| | ||||||||||||||| ||||||||||||||| |||||    
T  23125325 tacaattccaagatacacatatgtacctcataaagatagtggggttggtcaaggaacttgccacactccagttgtcatgtgattgtactttgct 23125418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 311
Target Start/End: Complemental strand, 24841563 - 24841399
Alignment:
Q  146 gacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttc 245  Q
    ||||| ||||| |||| ||||||||||| |  |||  | ||||| |||||||||| |||||||||||||||| |||||||| |||||   ||||| |  |    
T  24841563 gacttgactagcttaccacttccatgcaagtagaagaagcttagggaagatactcttactttcaaccacatacaattccaagatacacatatgtatcacc 24841464  T
Q  246 gaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
     ||||| | ||||||||||||||| ||||| ||||||  |||| ||||||||||| ||||| ||||    
T  24841463 taaaga-agtggggctggtcaagggatttgtcacactttagtcatcatgtgattggaccttactat 24841399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 19331330 - 19331207
Alignment:
Q  186 ttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactcca 285  Q
    |||||||| ||| || ||||||||||||| || ||||||||||||||   |||||||| | |||  || |  || |||| || ||||||| |||||||||    
T  19331330 ttagagaatatattcttactttcaaccacttacaattccaaaatacacatatgtacctcctaaaatcagtatggttggtgaaagcatttgtcacactcca 19331231  T
Q  286 gtcgtcatgtgattgtaccttgct 309  Q
    | |||||||||||| |||||||||    
T  19331230 gccgtcatgtgattctaccttgct 19331207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 20548459 - 20548423
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtcct 44  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  20548459 gtcatcaaaaccccaaacttagattgttgcttgtcct 20548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 11520903 - 11520775
Alignment:
Q  183 aacttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacact 282  Q
    |||||||||  ||||||| |||||||||||||| | ||||| || ||||| | ||||| |||| |||   | |||| |||||||||||||||||||||||    
T  11520903 aacttagagtggatactcttactttcaaccacaaacaattcaaagatacacgtatgtatcttctaaatctagtgggactggtcaaggcatttgccacact 11520804  T
Q  283 ccagtcgtcatgtgattgtaccttgctat 311  Q
    | ||||||||| |||||||||||||||||    
T  11520803 ctagtcgtcatatgattgtaccttgctat 11520775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 21017811 - 21017728
Alignment:
Q  11 atcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaataa 94  Q
    |||| |||| ||||||||||| ||| |||||||||| ||||| ||||| |||||||||| || ||||||||||| |||||||||    
T  21017811 atcacaacctcaaacttaaatcgttgcttgtccttaagcaacacaataacaagaagttagaaattacatgaatttaaagaataa 21017728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 13911205 - 13911119
Alignment:
Q  6 ccgtcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaat 92  Q
    ||||||||| ||||| |||||||||  ||| |||||||| | | ||| ||||||||| |||||| |||||||||||||| |||||||    
T  13911205 ccgtcatcacaaccctaaacttaaaccgttgcttgtcctaaagtaacacaatagcaataagttagaatttacatgaatttaaagaat 13911119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 16223572 - 16223608
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtcct 44  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  16223572 gtcatcacaaccccaaacttaaattgttgcttgtcct 16223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 311
Target Start/End: Original strand, 15576405 - 15576571
Alignment:
Q  144 cagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtacct 243  Q
    ||||| |||||| ||||| | ||||||||| |  |||| ||||||||||||||||   |||||||||||| ||| |||||||| ||||| | || |||||    
T  15576405 cagacgtaactatattaccatttccatgcaagaggaacaaacttagagaagatacaattactttcaaccaaataaaattccaagatacacgtatatacct 15576504  T
Q  244 tcgaaagacaatggggctggtcaaggcatttgccacactccagtcgtcatgtgattgtaccttgctat 311  Q
     | |||| |  ||||||||||||||||||||| |||||| ||| | ||||||||||||||||| ||||    
T  15576505 cctaaagccggtggggctggtcaaggcatttgtcacact-cagccatcatgtgattgtaccttactat 15576571  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 16527093 - 16526967
Alignment:
Q  184 acttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactc 283  Q
    ||||||||||||||||| || ||||||||||||| |||| ||| |||||   ||||||||   |||| || | |||||||||||| ||| |  |||||||    
T  16527093 acttagagaagatactcttaatttcaaccacatacaatttcaagatacacatatgtacctcttaaagtcagt-gggctggtcaagacatatttcacactc 16526995  T
Q  284 cagtcgtcatgtgattgtaccttgctat 311  Q
    ||||||||||||||||||||||| ||||    
T  16526994 cagtcgtcatgtgattgtacctttctat 16526967  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 12972738 - 12972863
Alignment:
Q  185 cttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactcc 284  Q
    |||||||||||||| | |||||||||| || |  |||||||| ||||||| |||| | |||  ||  || | | ||||||||||||||||||||||||||    
T  12972738 cttagagaagatacccttactttcaactacttgaaattccaagatacatgtatgttc-ttcttaaatcagtagtgctggtcaaggcatttgccacactcc 12972836  T
Q  285 agtcgtcatgtgattgtaccttgctat 311  Q
    | || ||||||||||||||||||||||    
T  12972837 aatcatcatgtgattgtaccttgctat 12972863  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 15574706 - 15574578
Alignment:
Q  183 aacttagagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacact 282  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||| |||||   ||||| |||| ||||    |||  |||||||| |||||| |||||||    
T  15574706 aacttagagaggatactcttactttcaaccacatatgattccaagatacacatatgtatcttctaaagcttgtggcactggtcaaagcatttaccacact 15574607  T
Q  283 ccagtcgtcatgtgattgtaccttgctat 311  Q
    | | | |||||||||||||| ||||||||    
T  15574606 ctacttgtcatgtgattgtatcttgctat 15574578  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 17860716 - 17860812
Alignment:
Q  136 cccatcaccagacttaactagattactacttccatgcatgctgaacgaacttagagaagatactcgtactttcaaccacatataattccaaaataca 232  Q
    ||||||| ||||||||||||| ||||  |||||||||| || ||||    |||||||| |||||| |||||||||||||||| ||||| || |||||    
T  17860716 cccatcatcagacttaactagcttacctcttccatgcaagcggaacatttttagagaacatactcttactttcaaccacatacaattctaatataca 17860812  T

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Target: scaffold0282 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 22723 - 22806
Alignment:
Q  9 tcatcaaaaccccaaacttaaattgtttcttgtccttatgcaacgcaatagcaagaagttaaaatttacatgaattaaaagaat 92  Q
    |||||| ||||||||||||||| |||| |||| ||| | ||||| |||||||||||||||| |||||||||||||| |||||||    
T  22723 tcatcacaaccccaaacttaaagtgttgcttgccctcaagcaacacaatagcaagaagttataatttacatgaatttaaagaat 22806  T

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Target: scaffold1026 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 2186 - 2308
Alignment:
Q  189 gagaagatactcgtactttcaaccacatataattccaaaatacatgcatgtaccttcgaaagacaatggggctggtcaaggcatttgccacactccagtc 288  Q
    |||||||||||| ||||||||||||| || || | ||| | ||||| |||||||| | |||| || ||  | |||| | || ||||||||||||| ||||    
T  2186 gagaagatactcttactttcaaccacgtacaaattcaagacacatgtatgtacctcctaaagccagtgcagatggttacggtatttgccacactcaagtc 2285  T
Q  289 gtcatgtgattgtaccttgctat 311  Q
    ||||||||||||||| |||||||    
T  2286 gtcatgtgattgtactttgctat 2308  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 38382 - 38418
Alignment:
Q  8 gtcatcaaaaccccaaacttaaattgtttcttgtcct 44  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  38382 gtcatcacaaccccaaacttaaattgttgcttgtcct 38418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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