View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2774_high_10 (Length: 208)

Name: NF2774_high_10
Description: NF2774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2774_high_10
NF2774_high_10
[»] chr6 (7 HSPs)
chr6 (94-208)||(2493349-2493463)
chr6 (169-208)||(2493625-2493664)
chr6 (175-208)||(8148130-8148163)
chr6 (174-207)||(10335391-10335424)
chr6 (171-208)||(31805553-31805590)
chr6 (170-198)||(2493830-2493858)
chr6 (176-208)||(33076418-33076450)
[»] chr4 (7 HSPs)
chr4 (94-208)||(27095936-27096050)
chr4 (173-208)||(2976704-2976739)
chr4 (169-208)||(27096212-27096251)
chr4 (174-205)||(46632852-46632883)
chr4 (174-208)||(8457935-8457969)
chr4 (174-206)||(683064-683096)
chr4 (170-198)||(27096417-27096445)
[»] chr1 (3 HSPs)
chr1 (177-207)||(17166829-17166859)
chr1 (175-207)||(24701116-24701148)
chr1 (176-208)||(29230075-29230107)
[»] chr7 (3 HSPs)
chr7 (170-198)||(2254992-2255020)
chr7 (175-207)||(3119407-3119439)
chr7 (175-207)||(10893363-10893395)
[»] chr3 (2 HSPs)
chr3 (176-208)||(21110480-21110512)
chr3 (176-208)||(32166200-32166232)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 2493349 - 2493463
Alignment:
Q  94 aaaattgaattttgagctccgtagcaccgacccttctgatagaaatgtgtccagtgtccaacactgacactaaattctaatgattacattcaattatgtc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2493349 aaaattgaattttgagctccgtagcaccgacccttctgatagaaatgtgtccagtgtccaacactgacactaaattctaatgattacattcaattatgtc 2493448  T
Q  194 attttgtcaaattat 208  Q
    |||||||||||||||    
T  2493449 attttgtcaaattat 2493463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 2493625 - 2493664
Alignment:
Q  169 tctaatgattacattcaattatgtcattttgtcaaattat 208  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  2493625 tctaatgattacattcaattatgtcattctggcaaattat 2493664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 8148163 - 8148130
Alignment:
Q  175 gattacattcaattatgtcattttgtcaaattat 208  Q
    |||||||||||||||||||||||| |||||||||    
T  8148163 gattacattcaattatgtcattttctcaaattat 8148130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 10335391 - 10335424
Alignment:
Q  174 tgattacattcaattatgtcattttgtcaaatta 207  Q
    ||||||||||||||||||||||||| ||||||||    
T  10335391 tgattacattcaattatgtcattttctcaaatta 10335424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 31805553 - 31805590
Alignment:
Q  171 taatgattacattcaattatgtcattttgtcaaattat 208  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  31805553 taatgattacattcaattatgtcattttatcatattat 31805590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 2493830 - 2493858
Alignment:
Q  170 ctaatgattacattcaattatgtcatttt 198  Q
    |||||||||||||||||||||||||||||    
T  2493830 ctaatgattacattcaattatgtcatttt 2493858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 33076450 - 33076418
Alignment:
Q  176 attacattcaattatgtcattttgtcaaattat 208  Q
    ||||||||||||||||||||||| |||||||||    
T  33076450 attacattcaattatgtcattttctcaaattat 33076418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 27095936 - 27096050
Alignment:
Q  94 aaaattgaattttgagctccgtagcaccgacccttctgatagaaatgtgtccagtgtccaacactgacactaaattctaatgattacattcaattatgtc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27095936 aaaattgaattttgagctccgtagcaccgacccttctgatagaaatgtgtccagtgtccaacactgacactaaattctaatgattacattcaattatgtc 27096035  T
Q  194 attttgtcaaattat 208  Q
    |||||||||||||||    
T  27096036 attttgtcaaattat 27096050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 2976739 - 2976704
Alignment:
Q  173 atgattacattcaattatgtcattttgtcaaattat 208  Q
    |||||||||||||||||||||||||| |||||||||    
T  2976739 atgattacattcaattatgtcattttctcaaattat 2976704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 27096212 - 27096251
Alignment:
Q  169 tctaatgattacattcaattatgtcattttgtcaaattat 208  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  27096212 tctaatgattacattcaattatgtcattctggcaaattat 27096251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 205
Target Start/End: Original strand, 46632852 - 46632883
Alignment:
Q  174 tgattacattcaattatgtcattttgtcaaat 205  Q
    ||||||||||||||||||||||||||||||||    
T  46632852 tgattacattcaattatgtcattttgtcaaat 46632883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 8457969 - 8457935
Alignment:
Q  174 tgattacattcaattatgtcattttgtcaaattat 208  Q
    ||||||||||||||||||||||||| |||||||||    
T  8457969 tgattacattcaattatgtcattttctcaaattat 8457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 683096 - 683064
Alignment:
Q  174 tgattacattcaattatgtcattttgtcaaatt 206  Q
    ||||||||||||||||||||||||| |||||||    
T  683096 tgattacattcaattatgtcattttctcaaatt 683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 27096417 - 27096445
Alignment:
Q  170 ctaatgattacattcaattatgtcatttt 198  Q
    |||||||||||||||||||||||||||||    
T  27096417 ctaatgattacattcaattatgtcatttt 27096445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 17166829 - 17166859
Alignment:
Q  177 ttacattcaattatgtcattttgtcaaatta 207  Q
    |||||||||||||||||||||||||||||||    
T  17166829 ttacattcaattatgtcattttgtcaaatta 17166859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 24701116 - 24701148
Alignment:
Q  175 gattacattcaattatgtcattttgtcaaatta 207  Q
    |||||||||||||||||||||||| ||||||||    
T  24701116 gattacattcaattatgtcattttttcaaatta 24701148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 29230107 - 29230075
Alignment:
Q  176 attacattcaattatgtcattttgtcaaattat 208  Q
    ||||||||||||||||||||||| |||||||||    
T  29230107 attacattcaattatgtcattttctcaaattat 29230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 2255020 - 2254992
Alignment:
Q  170 ctaatgattacattcaattatgtcatttt 198  Q
    |||||||||||||||||||||||||||||    
T  2255020 ctaatgattacattcaattatgtcatttt 2254992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 3119439 - 3119407
Alignment:
Q  175 gattacattcaattatgtcattttgtcaaatta 207  Q
    |||||||||||||||||||||||| ||||||||    
T  3119439 gattacattcaattatgtcattttctcaaatta 3119407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 10893363 - 10893395
Alignment:
Q  175 gattacattcaattatgtcattttgtcaaatta 207  Q
    |||||||||||||||||||||||| ||||||||    
T  10893363 gattacattcaattatgtcattttctcaaatta 10893395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 21110480 - 21110512
Alignment:
Q  176 attacattcaattatgtcattttgtcaaattat 208  Q
    ||||||||||||||||||||||| |||||||||    
T  21110480 attacattcaattatgtcattttctcaaattat 21110512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 32166200 - 32166232
Alignment:
Q  176 attacattcaattatgtcattttgtcaaattat 208  Q
    ||||||||||||||||||||||| |||||||||    
T  32166200 attacattcaattatgtcattttctcaaattat 32166232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University