View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2774_high_8 (Length: 238)
Name: NF2774_high_8
Description: NF2774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2774_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40394926 - 40394703
Alignment:
| Q |
1 |
agcttatgaaaataagctgaaaatggatccgacatgtcatatttttataaactatctcaaacagtctcgcaaatgattatttcattagataaatttaaac |
100 |
Q |
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| T |
40394926 |
agcttatgaaaataagctgaaaatggatccgacatgtcatatttttataaactatctcaaacagtctcgcaaatgattatttcattagataaatttaaac |
40394827 |
T |
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| Q |
101 |
aagtcaattcaaacgaacgccgatcttcgtttcttgcagccacttccttaatctaagacctttattttcatgctttgtaattatttggggtattgttctt |
200 |
Q |
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| T |
40394826 |
aagtcaattcaaacgaacaccaatcttcgtttcttgcagccacttccttaatctaagacctttattttcatgctttgtaattatttggggtattgttctt |
40394727 |
T |
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| Q |
201 |
tgttgtgattaataatcatgtgat |
224 |
Q |
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| T |
40394726 |
ttttgtgattaataatcatgtgat |
40394703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 55870334 - 55870262
Alignment:
| Q |
42 |
tttttataaactatctcaaacagtctcgcaaatgattatttcattagataaatttaaacaagtcaattcaaac |
114 |
Q |
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|||| |||| |||||||||| |||||| |||||| |||| |||||||||||| | ||| |||| ||| ||||| |
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| T |
55870334 |
ttttcataagctatctcaaagagtctcacaaatgtttatgtcattagataaactcaaataagttaatccaaac |
55870262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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