View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2774_low_1 (Length: 494)
Name: NF2774_low_1
Description: NF2774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2774_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 247 - 486
Target Start/End: Original strand, 37429799 - 37430038
Alignment:
| Q |
247 |
aagatgtaatggatgacgatgattgtattgacagggagctagaagatggagttgaaataggtcttgagaatgagaaaaataagcaagagataagacaaaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429799 |
aagatgtaatggatgacgatgattgtattgacagggagctagaagatggagttgaaataggtcttgagaatgagaaaaataagcaagagataagacaaaa |
37429898 |
T |
|
| Q |
347 |
ttggtctatgcccgatgacgtagatcatggtaaggcctatgaggaaactagagatggtagacaaatgagcatgaaagggcaattgcagaaagacataaat |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37429899 |
ttggtctatgcccgatgacgtagatcatggtaaggcctatgaggaaactagagatggtagacaaataagcatgaaagggcaattgcagaaagacataaat |
37429998 |
T |
|
| Q |
447 |
gaatacattgcagaagaagaggaagtgatagatgatgatg |
486 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37429999 |
gaatacattgcagaagaaggggaagtgatagatgatgatg |
37430038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 37429521 - 37429770
Alignment:
| Q |
1 |
ctcatcttcaaataatagtgggaccgatattagtgggagtacagaattgggcagtgacattacttgtgatgaaaagagagaagtggaagatagatctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37429521 |
ctcatcttcaaataatagtgggaccgacattagtgggagtacagaattgggcagtgacattactagtgatgacaagagagaagtggaagatagatctaaa |
37429620 |
T |
|
| Q |
101 |
tctgggactgatcgtatagttgtcggagaccaggatagaatggatggtcgaaatctcaagattaaggaaggcccagttggtcactcacctaaagaagcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37429621 |
tctgggactgatcgtatagttgtcggagaccaggatagaatggatggtcgaaatctcaagattaaggaaggctcagttggtcactcacctaaagaagcag |
37429720 |
T |
|
| Q |
201 |
tccagatgactgacaaagtcaagttaaaggctgcatttgtagaaataaga |
250 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
37429721 |
tccagatgactgataaagtcaagttaaaggctgcgtttgtagaaagaaga |
37429770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 37435309 - 37435206
Alignment:
| Q |
247 |
aagatgtaatggatgacgatgattgtattgacagggagctagaagatggagttgaaataggtcttgagaatgagaaaaataagcaagagataagacaaaa |
346 |
Q |
| |
|
|||||||||||||||| |||||| ||||| | | |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||| || |
|
|
| T |
37435309 |
aagatgtaatggatgaggatgatcacattgagatgaagctagaagatggagttgaattagctcttgagaatgagaaaaataagcgagagagaagacagaa |
37435210 |
T |
|
| Q |
347 |
ttgg |
350 |
Q |
| |
|
|||| |
|
|
| T |
37435209 |
ttgg |
37435206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 479
Target Start/End: Complemental strand, 37435181 - 37435107
Alignment:
| Q |
405 |
agacaaatgagcatgaaagggcaattgcagaaagacataaatgaatacattgcagaagaagaggaagtgatagat |
479 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
37435181 |
agacagatgagcatgaaaggacaattgcagaaagacatgaatgaatacattgcagaagaaggggaggtgatagat |
37435107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 32506519 - 32506577
Alignment:
| Q |
247 |
aagatgtaatggatgacgatgattgtattgacagggagctagaagatggagttgaaata |
305 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
32506519 |
aagatgtaatggatgaggatgatctcattgagagggagcttgaagatggagttgaaata |
32506577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 32506660 - 32506790
Alignment:
| Q |
247 |
aagatgtaatggatgacgatgattgtattgacagggagctagaagatggagttgaaataggtcttgagaatgagaaaaataagcaagagataagacaaaa |
346 |
Q |
| |
|
||||| ||||||| || |||||| ||||| |||||||| ||||||||||| || ||| ||||||||||||||||||||||| ||| |||||| | |
|
|
| T |
32506660 |
aagatataatggacgaggatgatctcattgagagggagcttgaagatggagtagagttagcagttgagaatgagaaaaataagcaacagagaagacagag |
32506759 |
T |
|
| Q |
347 |
ttggtctatgcccgatgacgtagatcatggt |
377 |
Q |
| |
|
| ||||| ||| ||||| | |||||||||| |
|
|
| T |
32506760 |
cttgtctaagcctgatgatgaagatcatggt |
32506790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University