View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2774_low_3 (Length: 416)

Name: NF2774_low_3
Description: NF2774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2774_low_3
NF2774_low_3
[»] chr2 (22 HSPs)
chr2 (187-416)||(43808508-43808737)
chr2 (187-269)||(33267572-33267654)
chr2 (179-255)||(18962108-18962184)
chr2 (194-255)||(11307250-11307312)
chr2 (187-255)||(28902009-28902077)
chr2 (300-365)||(43456649-43456714)
chr2 (209-259)||(3458610-3458661)
chr2 (177-255)||(9478221-9478299)
chr2 (300-359)||(29430821-29430880)
chr2 (176-211)||(44606202-44606237)
chr2 (303-345)||(1625967-1626009)
chr2 (194-255)||(17952771-17952832)
chr2 (222-255)||(1160814-1160847)
chr2 (297-334)||(18525210-18525247)
chr2 (223-268)||(19243577-19243622)
chr2 (194-255)||(40722547-40722606)
chr2 (300-357)||(44606060-44606117)
chr2 (300-340)||(1741999-1742039)
chr2 (211-255)||(5043630-5043674)
chr2 (187-234)||(5045248-5045295)
chr2 (223-255)||(31740029-31740061)
chr2 (223-255)||(37292417-37292449)
[»] chr7 (16 HSPs)
chr7 (50-210)||(44348390-44348550)
chr7 (300-359)||(3500913-3500974)
chr7 (299-365)||(22387838-22387904)
chr7 (302-336)||(31149705-31149739)
chr7 (302-336)||(31167997-31168031)
chr7 (180-255)||(40428479-40428555)
chr7 (315-359)||(44151424-44151468)
chr7 (177-255)||(49060462-49060540)
chr7 (193-255)||(36370609-36370669)
chr7 (179-255)||(27481364-27481440)
chr7 (300-345)||(44808221-44808266)
chr7 (299-347)||(8094368-8094416)
chr7 (184-255)||(33894552-33894622)
chr7 (298-354)||(36537969-36538025)
chr7 (223-255)||(40689056-40689088)
chr7 (194-253)||(45593791-45593850)
[»] chr8 (15 HSPs)
chr8 (179-251)||(4558722-4558794)
chr8 (300-358)||(21130675-21130733)
chr8 (194-269)||(26215435-26215510)
chr8 (187-238)||(2595084-2595134)
chr8 (201-255)||(42237492-42237547)
chr8 (223-253)||(2699274-2699304)
chr8 (300-354)||(9700064-9700118)
chr8 (300-354)||(14949929-14949983)
chr8 (305-338)||(27412851-27412884)
chr8 (298-347)||(30191101-30191150)
chr8 (184-247)||(1664312-1664375)
chr8 (315-371)||(10923674-10923730)
chr8 (299-359)||(11376765-11376825)
chr8 (184-255)||(29973010-29973081)
chr8 (303-355)||(31915245-31915297)
[»] chr6 (17 HSPs)
chr6 (188-270)||(2034494-2034575)
chr6 (300-347)||(1669758-1669805)
chr6 (298-345)||(20368142-20368189)
chr6 (189-256)||(32513759-32513825)
chr6 (300-354)||(2460104-2460158)
chr6 (223-255)||(1402964-1402996)
chr6 (298-354)||(27693392-27693448)
chr6 (189-255)||(10452430-10452496)
chr6 (300-359)||(32577934-32577993)
chr6 (194-255)||(7351678-7351739)
chr6 (300-354)||(30863309-30863363)
chr6 (301-355)||(30865547-30865601)
chr6 (302-359)||(27857423-27857480)
chr6 (300-353)||(32917260-32917313)
chr6 (209-252)||(2027479-2027523)
chr6 (209-252)||(28660833-28660877)
chr6 (310-354)||(31668430-31668474)
[»] chr5 (20 HSPs)
chr5 (187-255)||(35135732-35135800)
chr5 (187-269)||(32197659-32197741)
chr5 (178-255)||(32059659-32059735)
chr5 (314-365)||(7550460-7550511)
chr5 (305-340)||(8090004-8090039)
chr5 (187-253)||(41277422-41277489)
chr5 (300-354)||(11297149-11297203)
chr5 (307-357)||(12407680-12407730)
chr5 (298-348)||(37611174-37611224)
chr5 (298-348)||(37787904-37787954)
chr5 (298-371)||(40534260-40534333)
chr5 (298-358)||(4619768-4619828)
chr5 (223-255)||(8158371-8158403)
chr5 (300-340)||(10152397-10152437)
chr5 (298-330)||(11406255-11406287)
chr5 (177-269)||(11684345-11684435)
chr5 (301-345)||(12242672-12242716)
chr5 (300-340)||(14980572-14980612)
chr5 (177-248)||(29014678-29014749)
chr5 (194-253)||(37063146-37063205)
[»] chr3 (17 HSPs)
chr3 (299-347)||(2175809-2175857)
chr3 (302-347)||(25182947-25182992)
chr3 (184-253)||(25459696-25459764)
chr3 (300-347)||(1810040-1810087)
chr3 (179-249)||(3757972-3758042)
chr3 (301-340)||(40880915-40880954)
chr3 (310-357)||(47584523-47584570)
chr3 (299-354)||(50015948-50016003)
chr3 (298-340)||(21574551-21574593)
chr3 (306-344)||(47132063-47132101)
chr3 (298-371)||(50004713-50004787)
chr3 (195-255)||(1395611-1395671)
chr3 (302-347)||(14548681-14548726)
chr3 (298-354)||(2304224-2304280)
chr3 (200-255)||(37689454-37689509)
chr3 (196-259)||(42809242-42809305)
chr3 (307-347)||(50211805-50211845)
[»] chr1 (20 HSPs)
chr1 (191-255)||(48830146-48830210)
chr1 (304-359)||(4033965-4034020)
chr1 (188-253)||(1232964-1233029)
chr1 (187-253)||(45107555-45107620)
chr1 (302-355)||(16980868-16980921)
chr1 (193-253)||(30815707-30815767)
chr1 (188-244)||(1730825-1730881)
chr1 (178-234)||(3244827-3244883)
chr1 (300-347)||(49692012-49692059)
chr1 (299-357)||(4757400-4757458)
chr1 (303-345)||(6557039-6557081)
chr1 (300-357)||(38867783-38867838)
chr1 (300-337)||(6262801-6262838)
chr1 (316-353)||(7707269-7707306)
chr1 (299-340)||(28467495-28467536)
chr1 (300-357)||(34536221-34536278)
chr1 (223-255)||(9656618-9656650)
chr1 (188-255)||(15360827-15360894)
chr1 (179-255)||(32958576-32958652)
chr1 (223-255)||(52286646-52286678)
[»] chr4 (13 HSPs)
chr4 (305-359)||(18628501-18628555)
chr4 (300-354)||(27123305-27123359)
chr4 (300-357)||(2996636-2996693)
chr4 (194-253)||(437504-437564)
chr4 (300-339)||(27725277-27725316)
chr4 (188-247)||(28581988-28582046)
chr4 (302-357)||(33534119-33534174)
chr4 (187-252)||(42321952-42322017)
chr4 (298-347)||(1554968-1555017)
chr4 (223-252)||(5219573-5219602)
chr4 (305-338)||(52428733-52428766)
chr4 (213-249)||(12162911-12162947)
chr4 (291-347)||(56007734-56007789)
[»] scaffold0590 (1 HSPs)
scaffold0590 (187-254)||(1145-1212)
[»] scaffold0275 (1 HSPs)
scaffold0275 (187-254)||(2763-2830)
[»] scaffold0024 (2 HSPs)
scaffold0024 (177-238)||(24101-24163)
scaffold0024 (194-269)||(21334-21409)
[»] scaffold0199 (1 HSPs)
scaffold0199 (184-247)||(6753-6816)
[»] scaffold0153 (2 HSPs)
scaffold0153 (223-255)||(6568-6600)
scaffold0153 (223-255)||(13588-13620)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 187 - 416
Target Start/End: Original strand, 43808508 - 43808737
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaataagctgaaaataact 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808508 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaataagctgaaaataact 43808607  T
Q  287 tatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaacatgttctc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808608 tatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaacatgttctc 43808707  T
Q  387 attataagttcactttaagtctcctttgct 416  Q
    ||||||||||||||||||||||||||||||    
T  43808708 attataagttcactttaagtctcctttgct 43808737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 33267654 - 33267572
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataagctgtttctataagcta 269  Q
    |||||| |||||||||| |||||| | |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  33267654 taagtgcttatgtataatctatttct-ataacaaacagtaaaataaagttaaactgttttcatataagctgtttttataagcta 33267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 18962184 - 18962108
Alignment:
Q  179 ttattatgtaagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||| ||||||||| |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  18962184 ttatcatgtaagtgcttatgtattagctattttt-ataacaaaagataaaataaagttaaactgttttcatataagct 18962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 11307250 - 11307312
Alignment:
Q  194 ttatgtataagctattttttat-aacaaacataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||||||||| | |||||| ||||| |||||| |||||||||||||| |||||    
T  11307250 ttatgtataagctatttttttttaacaaagataaagtaaagtcaaactattttcataaaagct 11307312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 28902009 - 28902077
Alignment:
Q  187 taagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 255  Q
    |||||| ||||||||||||||||||| |||||| ||  ||||||||| ||||||| ||||||||||||||    
T  28902009 taagtgcttatgtataagctattttt-ataacataagttaaaataaaattaaactgttttcatataagct 28902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 43456714 - 43456649
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 365  Q
    ||||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||| ||| |||||    
T  43456714 acatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataa 43456649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 3458610 - 3458661
Alignment:
Q  209 tttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 259  Q
    |||||||||||||  |||||||||||| ||||| ||||||||||||||||||    
T  3458610 tttttataacaaaagataaaataaagtcaaacttttttcatataagctgttt 3458661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 9478221 - 9478299
Alignment:
Q  177 gcttattatgtaagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 255  Q
    |||||| || ||||||||||||||||||||| ||| |||||||  | |||||||||| | ||| ||||||||||||||||    
T  9478221 gcttatcatataagtgtttatgtataagcta-tttctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 29430821 - 29430880
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 359  Q
    |||||||||||| |||||||||||| |||  |||||||||  |||||| |||||||||||    
T  29430821 acatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagt 29430880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 44606237 - 44606202
Alignment:
Q  176 cgcttattatgtaagtgtttatgtataagctatttt 211  Q
    |||||||||| |||||||||||||||||||||||||    
T  44606237 cgcttattatataagtgtttatgtataagctatttt 44606202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 1625967 - 1626009
Alignment:
Q  303 tgtcataagttattttcataagctctctcaaatagtcttacaa 345  Q
    ||||||||| || ||||||||| ||||||||||||||||||||    
T  1625967 tgtcataagctactttcataagttctctcaaatagtcttacaa 1626009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 17952832 - 17952771
Alignment:
Q  194 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||| |||||||||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  17952832 ttatatataagctatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 1160847 - 1160814
Alignment:
Q  222 cataaaataaagttaaactattttcatataagct 255  Q
    ||||||||||||| ||||||||||||||||||||    
T  1160847 cataaaataaagtcaaactattttcatataagct 1160814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 18525247 - 18525210
Alignment:
Q  297 cgaacatgtcataagttattttcataagctctctcaaa 334  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  18525247 cgaatatgtcataagctattttcataagctctctcaaa 18525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 19243577 - 19243622
Alignment:
Q  223 ataaaataaagttaaactattttcatataagctgtttctataagct 268  Q
    |||||||||| ||||| | |||| ||||||||||||||||||||||    
T  19243577 ataaaataaatttaaattgttttgatataagctgtttctataagct 19243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 40722606 - 40722547
Alignment:
Q  194 ttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 255  Q
    ||||| ||||||| |||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  40722606 ttatgcataagct-ttttttataacaaa-ataaaataaagtcgaactgttttcatataagct 40722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 44606117 - 44606060
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    |||||||||||||| |||||||||| |||  |||| |||| |||||||| ||||||||    
T  44606117 acatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtca 44606060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 1742039 - 1741999
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtct 340  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  1742039 acatgtcataagttgtttccataagctctcccaaatagtct 1741999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 5043674 - 5043630
Alignment:
Q  211 tttataacaaacataaaataaagttaaactattttcatataagct 255  Q
    ||||||| ||| |||||||||||| ||||| ||||||||||||||    
T  5043674 tttataagaaagataaaataaagtcaaactgttttcatataagct 5043630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 5045295 - 5045248
Alignment:
Q  187 taagtgtttatgtataagctattttttataac-aaacataaaataaagt 234  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  5045295 taagtgtttatgtataagctat-ttttataacaaaagataaaataaagt 5045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 31740061 - 31740029
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||| ||||||||||||||||||||    
T  31740061 ataaaataaagtcaaactattttcatataagct 31740029  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 37292449 - 37292417
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||| ||||||||||||||||||||    
T  37292449 ataaaataaagtaaaactattttcatataagct 37292417  T

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Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 44348390 - 44348550
Alignment:
Q  50 aaattgcgacttcaagttagagtcaattttggaaggaaaatcattcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctcaaaaa 149  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44348390 aaattgaggcttcaagttagagtcaattttggaaggaaaatcagtcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctccaaaa 44348489  T
Q  150 tagcaacaaacatacacttaattcatcgcttattatgtaagtgtttatgtataagctattt 210  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  44348490 tagaaacaaacatacacttaattaatcgcttattatgtaagtgtttaagtataagctattt 44348550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 3500974 - 3500913
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtctta--caagtatttatgtcagt 359  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||  ||||| |||||||||||    
T  3500974 acatgtcataagttatttccataagctctcacaaatagacttacgcaagtttttatgtcagt 3500913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 22387904 - 22387838
Alignment:
Q  299 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 365  Q
    |||||| |||||||| ||||||||||||||| |||| ||||| ||| || ||||||||||| |||||    
T  22387904 aacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataa 22387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 31149705 - 31149739
Alignment:
Q  302 atgtcataagttattttcataagctctctcaaata 336  Q
    |||||||||||||||||||||||||||||||||||    
T  31149705 atgtcataagttattttcataagctctctcaaata 31149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 31167997 - 31168031
Alignment:
Q  302 atgtcataagttattttcataagctctctcaaata 336  Q
    |||||||||||||||||||||||||||||||||||    
T  31167997 atgtcataagttattttcataagctctctcaaata 31168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 40428479 - 40428555
Alignment:
Q  180 tattatgtaagtgtttatgtataagctattttttataac--aaacataaaataaagttaaactattttcatataagct 255  Q
    |||||| |||||| ||||| |||||| ||||| ||||||  ||| |||||||||||||||| ||||||||||||||||    
T  40428479 tattatataagtgattatggataagc-attttctataacgaaaaaataaaataaagttaaattattttcatataagct 40428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 44151468 - 44151424
Alignment:
Q  315 ttttcataagctctctcaaatagtcttacaagtatttatgtcagt 359  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  44151468 ttttcataagctctctcaaataatctcacaagtacttatgtcagt 44151424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 49060462 - 49060540
Alignment:
Q  177 gcttattatgtaagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 255  Q
    |||||| || ||||| ||||||||||||||| ||| |||||| ||| |||||||||||| ||| |||||| |||||||||    
T  49060462 gcttatcatataagtatttatgtataagcta-tttctataacaaaaaataaaataaagtcaaattatttttatataagct 49060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 36370609 - 36370669
Alignment:
Q  193 tttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 255  Q
    ||||||||||||||||||| |||||| || ||||||| |||||||||| |||||| |||||||    
T  36370609 tttatgtataagctattttctataac-aagataaaat-aagttaaactgttttcacataagct 36370669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 27481440 - 27481364
Alignment:
Q  179 ttattatgtaagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 255  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||  ||||||  |||| ||||| ||| ||||||||||    
T  27481440 ttattatataagtgtttatgtataagcta-tttctataacaaaggataaaacgaagtcaaactgtttccatataagct 27481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 44808221 - 44808266
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaa 345  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  44808221 acatgtcataagttattttcataaggtctatcaaacagtctgacaa 44808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 8094368 - 8094416
Alignment:
Q  299 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    ||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  8094368 aacatgtcataagctgttttcataaaatctctcaaatagtctcacaagt 8094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 33894552 - 33894622
Alignment:
Q  184 atgtaagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 255  Q
    ||||||||| |||||||||||||| ||| |||||| ||| ||||||| |||| ||||| ||||||||||||||    
T  33894552 atgtaagtgcttatgtataagcta-tttctataacaaaagataaaat-aagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 36537969 - 36538025
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    |||||||||||||||| ||| |||||| ||||||||| | ||| |||||| ||||||    
T  36537969 gaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 40689088 - 40689056
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||||| ||||||||||||||||    
T  40689088 ataaaataaagttaaattattttcatataagct 40689056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 45593850 - 45593791
Alignment:
Q  194 ttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 253  Q
    ||||||||||||||||| |  ||||||| ||||||||||||| ||||| ||||||||||||    
T  45593850 ttatgtataagctatttctg-taacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 4558722 - 4558794
Alignment:
Q  179 ttattatgtaagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatata 251  Q
    ||||||||||||||||||||||||||||| ||| |||||  ||| |||||||||||||||| ||||||||||||    
T  4558722 ttattatgtaagtgtttatgtataagcta-tttctataataaaagataaaataaagttaaattattttcatata 4558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 21130675 - 21130733
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 358  Q
    |||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||    
T  21130675 acatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatgtcag 21130733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 26215435 - 26215510
Alignment:
Q  194 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 269  Q
    ||||||||||||||||| | ||||||||  |||||||||||||||||||||||| |||||  |||||  ||||||||    
T  26215435 ttatgtataagctatttct-ataacaaaagataaaataaagttaaactattttcgtataatatgttttcataagcta 26215510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 2595134 - 2595084
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 238  Q
    |||||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  2595134 taagtgtttatgtataaggttttttttataac-aagataaaataaagttaaa 2595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 42237547 - 42237492
Alignment:
Q  201 taagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||||| ||||||||||||||  |||||||||||||||| | ||||||||||||||    
T  42237547 taagctcttttttataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 2699274 - 2699304
Alignment:
Q  223 ataaaataaagttaaactattttcatataag 253  Q
    |||||||||||||||||||||||||||||||    
T  2699274 ataaaataaagttaaactattttcatataag 2699304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 9700064 - 9700118
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    ||||||||||| ||  ||||| ||||||||||||||||||| |||||| ||||||    
T  9700064 acatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatg 9700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 14949929 - 14949983
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    ||||||||||||||||||||||||||||||  ||| ||||| |||| | ||||||    
T  14949929 acatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 27412884 - 27412851
Alignment:
Q  305 tcataagttattttcataagctctctcaaatagt 338  Q
    ||||||||| ||||||||||||||||||||||||    
T  27412884 tcataagttgttttcataagctctctcaaatagt 27412851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 30191150 - 30191101
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| ||||||    
T  30191150 gaacatgtcataagttgtttccataagctctcccaaacagtctaacaagt 30191101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 1664312 - 1664375
Alignment:
Q  184 atgtaagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 247  Q
    |||||||||||||| ||||||||| |||||||||| |||  |||||||||||| |||| ||||||    
T  1664312 atgtaagtgtttatatataagcta-tttttataacaaaaggtaaaataaagttgaacttttttca 1664375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 10923674 - 10923730
Alignment:
Q  315 ttttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 371  Q
    ||||||||| ||||||||||| ||||||||||| |||||| || | |||||| ||||    
T  10923674 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaa 10923730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 11376765 - 11376825
Alignment:
Q  299 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 359  Q
    ||||||||| ||| |||||||||||| |||| |||||||||| ||||| | |||| |||||    
T  11376765 aacatgtcacaagctattttcataagttctcccaaatagtctcacaagaacttatatcagt 11376825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 29973010 - 29973081
Alignment:
Q  184 atgtaagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 255  Q
    ||||||||| |||| |||||||||||| || ||||| ||  ||||||||||| |||||||||||| |||||||    
T  29973010 atgtaagtgcttatatataagctatttctt-taacacaaggtaaaataaagtcaaactattttcacataagct 29973081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 31915297 - 31915245
Alignment:
Q  303 tgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 355  Q
    ||||||||||| |||  ||||||| ||||||| ||||| ||||||||||||||    
T  31915297 tgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttatgt 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 2034575 - 2034494
Alignment:
Q  188 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaa 270  Q
    ||||| ||||||||||||| ||||| | |||||| |||||||||||| |||||| ||||||||||||| |||  |||||||||    
T  2034575 aagtgcttatgtataagctgttttt-acaacaaagataaaataaagtcaaactactttcatataagcttttttcataagctaa 2034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 1669805 - 1669758
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  1669805 acatgtcataagttgttttcataagctctcccaattagtcttacaagt 1669758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 20368189 - 20368142
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaa 345  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  20368189 gaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 32513759 - 32513825
Alignment:
Q  189 agtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctg 256  Q
    |||||||||| ||||| ||||| | |||||||| |||||||||||| ||||||||| |||||||||||    
T  32513759 agtgtttatgcataagttatttct-ataacaaaaataaaataaagtcaaactatttccatataagctg 32513825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 2460158 - 2460104
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  2460158 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 2460104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 1402964 - 1402996
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||||||||||||||||||||||    
T  1402964 ataaaataaagttaaactattttcatataagct 1402996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 27693448 - 27693392
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    |||||||||||||||| ||| |||||  ||||||||||||||| ||||||| |||||    
T  27693448 gaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 10452496 - 10452430
Alignment:
Q  189 agtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||| ||||||||||||||||| | ||||||||  |||||||||| | ||||||||||||||||||||    
T  10452496 agtgcttatgtataagctatttct-ataacaaaatataaaataaaatcaaactattttcatataagct 10452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 32577993 - 32577934
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 359  Q
    |||||||||||||| |||||||||||||||||||| | | |  |||||||||||| ||||    
T  32577993 acatgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatgccagt 32577934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 7351739 - 7351678
Alignment:
Q  194 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||| |||||| | |||| |||| |||||||||||||||||| ||||||||||||||    
T  7351739 ttatgtataaactatttat-ataataaactataaaataaagttaaactgttttcatataagct 7351678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 30863309 - 30863363
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    |||||||||||||| ||||||||||||||  |||| ||||| |||||| ||||||    
T  30863309 acatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 30865547 - 30865601
Alignment:
Q  301 catgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 355  Q
    ||||||||||||||||| |||||||||||| |||  |||| |||||| |||||||    
T  30865547 catgtcataagttatttccataagctctcttaaactgtctaacaagtgtttatgt 30865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 27857423 - 27857480
Alignment:
Q  302 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 359  Q
    |||||||||||| ||||||||||||||| |||| ||| | |||||| | |||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagt 27857480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 32917260 - 32917313
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttat 353  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| |||||| |||||    
T  32917260 acatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 2027523 - 2027479
Alignment:
Q  209 tttttataacaaac-ataaaataaagttaaactattttcatataa 252  Q
    |||||||||||||  |||||||||||| |||||||||||||||||    
T  2027523 tttttataacaaaagataaaataaagtcaaactattttcatataa 2027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 28660877 - 28660833
Alignment:
Q  209 tttttataacaa-acataaaataaagttaaactattttcatataa 252  Q
    |||||||||||| | |||||||||||||||| |||||||||||||    
T  28660877 tttttataacaatagataaaataaagttaaattattttcatataa 28660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 31668430 - 31668474
Alignment:
Q  310 agttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||    
T  31668430 agttgttttcataagctctctctaatagtctcacaagtgtttatg 31668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 35135800 - 35135732
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||||||| ||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  35135800 taagtgtttatgtataagatatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 32197659 - 32197741
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaacataaa-ataaagttaaactattttcatataagctgtttctataagcta 269  Q
    |||||||||| |||||| |||||| || ||||||| ||  | ||||||| ||||||||||||||||||||||||| ||||||||    
T  32197659 taagtgtttacgtataaactatttatt-taacaaaaatttatataaagtcaaactattttcatataagctgtttccataagcta 32197741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 32059735 - 32059659
Alignment:
Q  178 cttattatgtaagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 255  Q
    ||||| || |||||| ||||||||||||| |||||  |||| || |||||||||||| ||||| ||||||||||||||    
T  32059735 cttatcatataagtgcttatgtataagctgtttttg-taactaagataaaataaagtcaaactgttttcatataagct 32059659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 7550511 - 7550460
Alignment:
Q  314 attttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 365  Q
    |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  7550511 atttccataagctctctcaaagagtctcacaagtaattatgtcagtggataa 7550460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 8090004 - 8090039
Alignment:
Q  305 tcataagttattttcataagctctctcaaatagtct 340  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8090004 tcataagttgttttcataagctctctcaaatagtct 8090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 41277489 - 41277422
Alignment:
Q  187 taagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 253  Q
    |||||| ||||||| ||||| |||||| ||| |||| |||||||||||| ||||| ||||||||||||    
T  41277489 taagtgcttatgtaaaagcttttttttgtaatcaaagataaaataaagtcaaactgttttcatataag 41277422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 11297203 - 11297149
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    ||||||| |||||| ||| |||||||||| ||||| |||||||||||| ||||||    
T  11297203 acatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatg 11297149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 12407730 - 12407680
Alignment:
Q  307 ataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    |||||| |||||||||||||||||||||  |||| |||||| |||||||||    
T  12407730 ataagtcattttcataagctctctcaaaccgtctcacaagtgtttatgtca 12407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 37611224 - 37611174
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 348  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37611224 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37611174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 37787954 - 37787904
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 348  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37787954 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 40534260 - 40534333
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 371  Q
    |||||||||||||| || || |||||||||||  ||| ||| | |||||| ||||||||||| |||||| ||||    
T  40534260 gaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaa 40534333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 4619768 - 4619828
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 358  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| || |||||  |||||||||    
T  4619768 gaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttatgtcag 4619828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 8158403 - 8158371
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||||| ||||||||||||||||    
T  8158403 ataaaataaagttaaattattttcatataagct 8158371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 10152397 - 10152437
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtct 340  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  10152397 acatgtcataagttgttttcataagctctccaaaatagtct 10152437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 11406255 - 11406287
Alignment:
Q  298 gaacatgtcataagttattttcataagctctct 330  Q
    |||||| ||||||||||||||||||||||||||    
T  11406255 gaacatatcataagttattttcataagctctct 11406287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 11684345 - 11684435
Alignment:
Q  177 gcttattatgtaagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagcta 269  Q
    |||||| || |||||| | |||||||||||| ||||||||||||| ||| || | ||| ||||| |||||||||||||| |||  ||||||||    
T  11684345 gcttatcatataagtgctaatgtataagcta-tttttataacaaa-atataaaatagtgaaactgttttcatataagctattttcataagcta 11684435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 12242716 - 12242672
Alignment:
Q  301 catgtcataagttattttcataagctctctcaaatagtcttacaa 345  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||    
T  12242716 catgtcataagttttttccataagctctctcaaataatctcacaa 12242672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 14980572 - 14980612
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtct 340  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  14980572 acatgtcataagtcatttttataagctctctcaaacagtct 14980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 29014678 - 29014749
Alignment:
Q  177 gcttattatgtaagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcat 248  Q
    |||||| || |||||||| |||||||||||| ||||||| | |||| ||||||| |||| |||||||||||||    
T  29014678 gcttatcatataagtgttcatgtataagcta-tttttatgataaacgataaaatcaagtcaaactattttcat 29014749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 37063205 - 37063146
Alignment:
Q  194 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 253  Q
    |||||||||| |||||| | ||||||||  |||||||||||| ||||||||||||||||||    
T  37063205 ttatgtataaactatttct-ataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 2175857 - 2175809
Alignment:
Q  299 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  2175857 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 2175809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 25182992 - 25182947
Alignment:
Q  302 atgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||    
T  25182992 atgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 25459764 - 25459696
Alignment:
Q  184 atgtaagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 253  Q
    ||||||||| || ||||||| ||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  25459764 atgtaagtgcttttgtataaactattgtt-ataacaaagataatataaagataaactattttcatataag 25459696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 1810040 - 1810087
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    |||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  1810040 acatgtcataagttgtttccgtaagctctctcaaatagtctcacaagt 1810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 3757972 - 3758042
Alignment:
Q  179 ttattatgtaagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 249  Q
    ||||| |||||||| |||||||||||||| ||||| |||| ||| |||||||||||| ||||| ||||||||    
T  3757972 ttattgtgtaagtgcttatgtataagcta-tttttgtaacaaaatataaaataaagtcaaactcttttcata 3758042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 40880954 - 40880915
Alignment:
Q  301 catgtcataagttattttcataagctctctcaaatagtct 340  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  40880954 catgtcataagttgttttcataagctctctcaaacagtct 40880915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 47584523 - 47584570
Alignment:
Q  310 agttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  47584523 agttcttttcataagctctctcaaatagtctcacaagtgcttatgtca 47584570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 50015948 - 50016003
Alignment:
Q  299 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||| ||||||    
T  50015948 aacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatg 50016003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 21574551 - 21574593
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtct 340  Q
    |||||||||||||||| ||||||||||||||| |||| |||||    
T  21574551 gaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 47132063 - 47132101
Alignment:
Q  306 cataagttattttcataagctctctcaaatagtcttaca 344  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  47132063 cataagttgttttcataagttctctcaaatagtcttaca 47132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 50004713 - 50004787
Alignment:
Q  298 gaacatgtcataagttattttcataa-gctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 371  Q
    |||||||||||||||| ||| ||||| || |||||||| |||||||||| |  |||||||||| |||||| ||||    
T  50004713 gaacatgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 1395611 - 1395671
Alignment:
Q  195 tatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  1395611 tatgtataagctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 14548726 - 14548681
Alignment:
Q  302 atgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||||    
T  14548726 atgtcatacgttgttttcataagctctctcaaacagtctcacaagt 14548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 2304280 - 2304224
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    ||||||||||||||||  ||||||||  ||||||||||||| | |||||| ||||||    
T  2304280 gaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatg 2304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 37689509 - 37689454
Alignment:
Q  200 ataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    ||||||||||||| ||||||||  ||||| |||||||||| ||||||||||||||||    
T  37689509 ataagctattttt-ataacaaaagataaagtaaagttaaattattttcatataagct 37689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 42809242 - 42809305
Alignment:
Q  196 atgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 259  Q
    ||||||||||||||| | ||||||||  |||||||| ||||||| | ||||||||||||||||||    
T  42809242 atgtataagctatttct-ataacaaaagataaaatatagttaaattgttttcatataagctgttt 42809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 50211805 - 50211845
Alignment:
Q  307 ataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagt 50211845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 48830210 - 48830146
Alignment:
Q  191 tgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||| ||||| |  || |||| |||||||||||| ||||||||||||||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagct 48830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 4034020 - 4033965
Alignment:
Q  304 gtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 359  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| |||||| ||||    
T  4034020 gtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagt 4033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 1233029 - 1232964
Alignment:
Q  188 aagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 253  Q
    ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  1233029 aagtgtttatgcataagctgttttt-ataacaaaacataaaataaagttaaattattttcgtataag 1232964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 45107555 - 45107620
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 253  Q
    |||||| |||| |||||||||||| | |||| ||| |||||||||||| ||||||||||||||||||    
T  45107555 taagtgcttatctataagctatttct-ataagaaaaataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 16980868 - 16980921
Alignment:
Q  302 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 355  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||    
T  16980868 atgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgt 16980921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 30815767 - 30815707
Alignment:
Q  193 tttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 253  Q
    ||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||||||    
T  30815767 tttatgtctaagct-ttttctataacaaaagataaaataaagttaaactattttcatataag 30815707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 1730825 - 1730881
Alignment:
Q  188 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattt 244  Q
    ||||| ||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  1730825 aagtgcttatgtataagctatttttttaaccaaagataaaataaagtcaaactattt 1730881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 3244827 - 3244883
Alignment:
Q  178 cttattatgtaagtgtttatgtataagctattttttataacaaacataaaataaagt 234  Q
    ||||| ||||||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  3244827 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 3244883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 49692059 - 49692012
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    |||||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  49692059 acatgtcataagctattttcataagttctctcaaacagtctcacaagt 49692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 4757400 - 4757458
Alignment:
Q  299 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    ||||||||||||||| |||||||||| |||  ||||| |||| |||||| |||||||||    
T  4757400 aacatgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtca 4757458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 6557039 - 6557081
Alignment:
Q  303 tgtcataagttattttcataagctctctcaaatagtcttacaa 345  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  6557039 tgtcataagctattttcataagttctctcaaatagtctcacaa 6557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 38867838 - 38867783
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    |||| ||||||||||||| |||||||||||||||| ||||  |||||| |||||||||    
T  38867838 acatatcataagttatttccataagctctctcaaacagtc--acaagtgtttatgtca 38867783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 6262801 - 6262838
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatag 337  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6262801 acatatcataagttattttcataagctctcccaaatag 6262838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 7707269 - 7707306
Alignment:
Q  316 tttcataagctctctcaaatagtcttacaagtatttat 353  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  7707269 tttcataaactctctcaaataatcttacaagtatttat 7707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 28467495 - 28467536
Alignment:
Q  299 aacatgtcataagttattttcataagctctctcaaatagtct 340  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  28467495 aacatgtcataagttatttccataatctctcccaaatagtct 28467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 34536221 - 34536278
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    |||||||||||| | |||||||||||  ||||||| ||||| |||||| |||||||||    
T  34536221 acatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtca 34536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 9656618 - 9656650
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||||| ||||||||||||||||    
T  9656618 ataaaataaagttaaattattttcatataagct 9656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 15360827 - 15360894
Alignment:
Q  188 aagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||||| || ||||| | ||||||||  |||||||||||| ||||| ||||||||||||||    
T  15360827 aagtgtttatgtattagttatttct-ataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 32958576 - 32958652
Alignment:
Q  179 ttattatgtaagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 255  Q
    ||||||||||||| |||| ||||||||| ||| |   | |||| ||||||| |||| |||||||||||| |||||||    
T  32958576 ttattatgtaagtatttacgtataagctctttctatcaccaaagataaaattaagtcaaactattttcagataagct 32958652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 52286646 - 52286678
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    ||||||||||||||||| |||||||||||||||    
T  52286646 ataaaataaagttaaacaattttcatataagct 52286678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 18628555 - 18628501
Alignment:
Q  305 tcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 359  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| |||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagt 18628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 27123359 - 27123305
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 354  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  27123359 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 27123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 2996636 - 2996693
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    |||||||||||||| |||||||||||||||||||| ||||| | ||||  ||||||||    
T  2996636 acatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtca 2996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 437564 - 437504
Alignment:
Q  194 ttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 253  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||| | | ||||||||||    
T  437564 ttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 27725277 - 27725316
Alignment:
Q  300 acatgtcataagttattttcataagctctctcaaatagtc 339  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  27725277 acatgtcataagttatttccataagctctctcaaacagtc 27725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 28582046 - 28581988
Alignment:
Q  188 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttca 247  Q
    |||||||||||||||| ||||||||||  | ||| |||||||||||| ||||||||||||    
T  28582046 aagtgtttatgtataaactattttttagca-aaagataaaataaagtcaaactattttca 28581988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 33534174 - 33534119
Alignment:
Q  302 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 357  Q
    |||||| || || |||||||||||||||||||||| ||| ||||||| ||||||||    
T  33534174 atgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtca 33534119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 42322017 - 42321952
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 252  Q
    |||||||||||| ||||||||| ||||||||||||  |||||||||||| ||| | |||||||||||    
T  42322017 taagtgtttatgaataagctat-ttttataacaaatgataaaataaagtcaaattgttttcatataa 42321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 1555017 - 1554968
Alignment:
Q  298 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    |||||||||||||| |||||||||||  ||||||||| |||||| |||||    
T  1555017 gaacatgtcataagctattttcataaattctctcaaacagtcttgcaagt 1554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 5219602 - 5219573
Alignment:
Q  223 ataaaataaagttaaactattttcatataa 252  Q
    ||||||||||||||||||||||||||||||    
T  5219602 ataaaataaagttaaactattttcatataa 5219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 52428733 - 52428766
Alignment:
Q  305 tcataagttattttcataagctctctcaaatagt 338  Q
    ||||||||| ||||||||||||||||||||||||    
T  52428733 tcataagttgttttcataagctctctcaaatagt 52428766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 12162911 - 12162947
Alignment:
Q  213 tataacaaacataaaataaagttaaactattttcata 249  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  12162911 tataacaaacataaaataaagtcaaattattttcata 12162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 56007734 - 56007789
Alignment:
Q  291 gacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 347  Q
    ||||||||| |||||||||||||| ||  || |||||||||||| ||||||||||||    
T  56007734 gacaatcga-catgtcataagttacttgtattagctctctcaaacagtcttacaagt 56007789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 1212 - 1145
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagc 254  Q
    |||||| ||||||||||||||||| | ||||||||  |||||||||||| |||||||| ||||||||||    
T  1212 taagtgcttatgtataagctatttct-ataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 2763 - 2830
Alignment:
Q  187 taagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagc 254  Q
    |||||| ||||||||||||||||| | ||||||||  |||||||||||| |||||||| ||||||||||    
T  2763 taagtgcttatgtataagctatttct-ataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 24163 - 24101
Alignment:
Q  177 gcttattatgtaagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaa 238  Q
    ||||||||| ||||| || ||||||||| | ||||||||||||||| |||||| |||||||||    
T  24163 gcttattatataagtattcatgtataagttgttttttataacaaacgataaaacaaagttaaa 24101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 21409 - 21334
Alignment:
Q  194 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 269  Q
    ||||||||||||||||||| |||  |||  |||||||||||||||| | ||||| ||||||||||||  ||||||||    
T  21409 ttatgtataagctattttt-ataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagcta 21334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 6753 - 6816
Alignment:
Q  184 atgtaagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 247  Q
    |||||||||||||| ||||||||| |||||||||| |||  |||||||||||| |||| ||||||    
T  6753 atgtaagtgtttatatataagcta-tttttataacaaaaggtaaaataaagttgaacttttttca 6816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 6600 - 6568
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||| ||||||||||||||||||||    
T  6600 ataaaataaagtcaaactattttcatataagct 6568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 13620 - 13588
Alignment:
Q  223 ataaaataaagttaaactattttcatataagct 255  Q
    |||||||||||| ||||||||||||||||||||    
T  13620 ataaaataaagtcaaactattttcatataagct 13588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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