View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2774_low_4 (Length: 365)

Name: NF2774_low_4
Description: NF2774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2774_low_4
NF2774_low_4
[»] chr5 (19 HSPs)
chr5 (16-329)||(40371897-40372207)
chr5 (222-329)||(24565574-24565681)
chr5 (222-329)||(24606610-24606717)
chr5 (289-329)||(20476123-20476163)
chr5 (285-329)||(39937909-39937953)
chr5 (291-329)||(27345928-27345966)
chr5 (288-329)||(2029053-2029094)
chr5 (288-329)||(23253492-23253533)
chr5 (285-329)||(2028338-2028382)
chr5 (285-329)||(35524123-35524167)
chr5 (285-321)||(39466894-39466930)
chr5 (285-328)||(4095877-4095920)
chr5 (279-329)||(35524874-35524924)
chr5 (292-329)||(29595604-29595641)
chr5 (288-329)||(38129849-38129890)
chr5 (292-329)||(39936256-39936293)
chr5 (289-329)||(8743108-8743148)
chr5 (285-329)||(15561411-15561455)
chr5 (289-329)||(23257320-23257360)
[»] chr4 (28 HSPs)
chr4 (10-329)||(45394479-45394782)
chr4 (196-329)||(2460848-2460981)
chr4 (262-329)||(24666832-24666899)
chr4 (292-329)||(51386457-51386494)
chr4 (253-329)||(34941503-34941579)
chr4 (141-232)||(5227887-5227978)
chr4 (272-326)||(18363643-18363697)
chr4 (255-329)||(24666130-24666204)
chr4 (272-326)||(36599231-36599285)
chr4 (262-328)||(53778395-53778461)
chr4 (288-329)||(14527582-14527623)
chr4 (285-329)||(6057002-6057046)
chr4 (285-329)||(13924794-13924838)
chr4 (285-321)||(26354235-26354271)
chr4 (285-329)||(53777822-53777866)
chr4 (274-329)||(25055110-25055165)
chr4 (286-321)||(34450824-34450859)
chr4 (286-329)||(42792776-42792819)
chr4 (286-321)||(47156642-47156677)
chr4 (286-321)||(47157383-47157418)
chr4 (286-329)||(52129422-52129465)
chr4 (258-328)||(47764077-47764147)
chr4 (288-329)||(20143280-20143321)
chr4 (288-329)||(34451443-34451484)
chr4 (288-329)||(51387131-51387172)
chr4 (294-330)||(6244526-6244562)
chr4 (289-329)||(21837390-21837430)
chr4 (285-321)||(25725811-25725847)
[»] chr2 (16 HSPs)
chr2 (49-329)||(20606287-20606559)
chr2 (45-317)||(40583763-40584019)
chr2 (143-325)||(38138589-38138770)
chr2 (255-327)||(23458597-23458669)
chr2 (288-329)||(6873523-6873564)
chr2 (288-329)||(127741-127782)
chr2 (288-321)||(20606927-20606960)
chr2 (285-329)||(7754970-7755014)
chr2 (286-329)||(18537497-18537540)
chr2 (291-329)||(29388957-29388995)
chr2 (291-321)||(44297423-44297453)
chr2 (288-329)||(10173937-10173978)
chr2 (285-329)||(127034-127078)
chr2 (293-329)||(2655730-2655766)
chr2 (285-329)||(30201991-30202035)
chr2 (285-321)||(44296869-44296905)
[»] chr7 (26 HSPs)
chr7 (80-329)||(30580636-30580884)
chr7 (49-328)||(43660150-43660425)
chr7 (222-329)||(36611434-36611541)
chr7 (272-329)||(767956-768013)
chr7 (272-329)||(46491678-46491735)
chr7 (262-329)||(767137-767204)
chr7 (263-329)||(41965758-41965824)
chr7 (286-321)||(42818557-42818592)
chr7 (263-329)||(24874559-24874625)
chr7 (255-329)||(41358312-41358386)
chr7 (288-329)||(3314956-3314997)
chr7 (288-329)||(17114146-17114187)
chr7 (288-321)||(36611560-36611593)
chr7 (276-329)||(41358965-41359018)
chr7 (253-329)||(9147103-9147179)
chr7 (285-329)||(28007158-28007202)
chr7 (286-321)||(7329072-7329107)
chr7 (294-325)||(36611750-36611781)
chr7 (262-329)||(41965113-41965180)
chr7 (285-328)||(44876937-44876980)
chr7 (279-329)||(41617193-41617243)
chr7 (258-311)||(9147838-9147891)
chr7 (288-329)||(10590299-10590340)
chr7 (292-321)||(30581276-30581305)
chr7 (292-329)||(46491011-46491048)
chr7 (289-329)||(3315470-3315510)
[»] chr6 (6 HSPs)
chr6 (255-329)||(16718967-16719041)
chr6 (253-329)||(5312969-5313045)
chr6 (258-317)||(5312254-5312313)
chr6 (262-329)||(10965231-10965298)
chr6 (285-321)||(2138486-2138522)
chr6 (285-329)||(10966383-10966427)
[»] chr1 (17 HSPs)
chr1 (262-329)||(26240851-26240918)
chr1 (285-329)||(12449315-12449359)
chr1 (288-329)||(16449556-16449597)
chr1 (288-329)||(16459130-16459171)
chr1 (255-329)||(26240115-26240189)
chr1 (283-329)||(31109240-31109286)
chr1 (283-329)||(31116685-31116731)
chr1 (288-329)||(24847784-24847825)
chr1 (288-329)||(24848432-24848473)
chr1 (286-329)||(27746162-27746205)
chr1 (291-329)||(27745557-27745595)
chr1 (279-329)||(51547593-51547643)
chr1 (289-326)||(2260857-2260894)
chr1 (292-325)||(2261553-2261586)
chr1 (289-326)||(14166914-14166951)
chr1 (288-329)||(46253627-46253668)
chr1 (285-329)||(43552995-43553039)
[»] chr8 (18 HSPs)
chr8 (255-329)||(22632323-22632397)
chr8 (279-329)||(22632965-22633015)
chr8 (285-325)||(42664000-42664040)
chr8 (258-329)||(26847098-26847169)
chr8 (288-329)||(4402293-4402334)
chr8 (288-329)||(16911052-16911093)
chr8 (288-329)||(42094010-42094051)
chr8 (285-329)||(5434033-5434077)
chr8 (285-329)||(36402202-36402246)
chr8 (262-329)||(5434749-5434816)
chr8 (288-321)||(202586-202619)
chr8 (288-321)||(317423-317456)
chr8 (288-329)||(35347666-35347707)
chr8 (288-321)||(36180696-36180729)
chr8 (286-318)||(16718381-16718413)
chr8 (285-329)||(27243447-27243491)
chr8 (285-329)||(27255022-27255066)
chr8 (285-329)||(36403028-36403072)
[»] chr3 (32 HSPs)
chr3 (288-329)||(20807938-20807979)
chr3 (288-329)||(54308454-54308495)
chr3 (285-329)||(9830573-9830617)
chr3 (285-329)||(15287568-15287612)
chr3 (285-329)||(24511995-24512039)
chr3 (288-329)||(4706962-4707003)
chr3 (288-329)||(20808613-20808654)
chr3 (288-329)||(47571197-47571238)
chr3 (288-329)||(49349677-49349718)
chr3 (288-329)||(49350276-49350317)
chr3 (258-318)||(29516525-29516585)
chr3 (288-328)||(38557237-38557277)
chr3 (253-329)||(54754292-54754368)
chr3 (258-317)||(53346472-53346531)
chr3 (272-326)||(43479501-43479555)
chr3 (255-321)||(47571912-47571978)
chr3 (288-329)||(4706278-4706319)
chr3 (288-321)||(18745376-18745409)
chr3 (295-328)||(48626127-48626160)
chr3 (272-329)||(53242667-53242724)
chr3 (288-329)||(53343862-53343903)
chr3 (288-329)||(53344747-53344788)
chr3 (288-328)||(2226706-2226746)
chr3 (285-329)||(9831265-9831309)
chr3 (285-329)||(14746042-14746086)
chr3 (262-318)||(14746882-14746938)
chr3 (283-315)||(35982513-35982545)
chr3 (285-329)||(43453440-43453484)
chr3 (285-329)||(43454164-43454208)
chr3 (288-328)||(47677523-47677563)
chr3 (285-321)||(51920723-51920759)
chr3 (258-318)||(54753589-54753649)
[»] scaffold0627 (1 HSPs)
scaffold0627 (285-321)||(6473-6509)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 40371897 - 40372207
Alignment:
Q  16 gaaacatatggaacagtcgcattgtttttcaagtccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttggttaaa 115  Q
    ||||||||||||||| ||||||| |||  |||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  40371897 gaaacatatggaacaatcgcattattt--caagtccatatt-ccattacacaccttcagttaatgcttaaagcattatgttgtagtgtgtcttggttaaa 40371993  T
Q  116 ataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaactta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  ||    
T  40371994 ataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattttgtgtagcaaggta 40372093  T
Q  216 aacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40372094 aacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgaggaacttaattgaaccctc 40372193  T
Q  316 accctaaaatccac 329  Q
    |||||| |||||||    
T  40372194 accctagaatccac 40372207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 24565681 - 24565574
Alignment:
Q  222 ttctcatttttaattttcaacaaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccct 320  Q
    ||||||||||| ||||| || |||||||||||  |||||||||||||| | |||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  24565681 ttctcattttttattttaaa-aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccct 24565583  T
Q  321 aaaatccac 329  Q
    | |||||||    
T  24565582 agaatccac 24565574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 24606717 - 24606610
Alignment:
Q  222 ttctcatttttaattttcaacaaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccct 320  Q
    ||||||||||| ||||| || |||||||||||  |||||||||||||| | |||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  24606717 ttctcattttttattttaaa-aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccct 24606619  T
Q  321 aaaatccac 329  Q
    | |||||||    
T  24606618 agaatccac 24606610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 20476123 - 20476163
Alignment:
Q  289 accggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  20476123 accggtgagggacttaattgatccctcaccctaaaatccac 20476163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 39937909 - 39937953
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  39937909 gtccaccggtgagggacttaactgaaccctcaccctagaatccac 39937953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 27345928 - 27345966
Alignment:
Q  291 cggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  27345928 cggtgagggacttaattgaaccctcaccctagaatccac 27345966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 2029053 - 2029094
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccac 2029094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 23253492 - 23253533
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  23253492 caccggtgagggacttaattggaccctcaccctagaatccac 23253533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 2028382 - 2028338
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||    
T  2028382 gtccatcggcgagggacttagttgaaccctcaccctaaaatccac 2028338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 35524167 - 35524123
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||    
T  35524167 gtccaccggtgagggacttaattgaactctcatcctagaatccac 35524123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 39466930 - 39466894
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcacccta 321  Q
    |||||||||||||||||||||||| ||||||||||||    
T  39466930 gtccaccggtgagggacttaattggaccctcacccta 39466894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 4095877 - 4095920
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||    
T  4095877 gtccatcggtgagggatttaattggaccctcaccctaaaatcca 4095920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 35524874 - 35524924
Alignment:
Q  279 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||||||||||  |||||||||| ||||||||||| |||||||    
T  35524874 ttcatggtccaccggtgagaaacttaattgatccctcaccctagaatccac 35524924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 29595604 - 29595641
Alignment:
Q  292 ggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  29595604 ggtgagggacttaattgaaccctcacgctagaatccac 29595641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 38129849 - 38129890
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  38129849 caccggtgagggacttaattgttccctcaccttaaaatccac 38129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 39936293 - 39936256
Alignment:
Q  292 ggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||||| || |||||||    
T  39936293 ggtgagggacttaattgaaccctcaccttagaatccac 39936256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 8743108 - 8743148
Alignment:
Q  289 accggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  8743108 accggtgagggacttaattgaaccttcaccttagaatccac 8743148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 15561455 - 15561411
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||| | || ||||||||||| |||||||    
T  15561455 gtccaccggtgagggacttagtagagccctcaccctagaatccac 15561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 23257360 - 23257320
Alignment:
Q  289 accggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  23257360 accggtgagggacttaattggaccctcactctagaatccac 23257320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 45394479 - 45394782
Alignment:
Q  10 tgagatgaaacatatggaacagtcgcattgtttttcaagtccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttg 109  Q
    ||||| ||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||| ||||||    
T  45394479 tgagaagaaacatatggaacagtcgcattattt--caaatccatatttccattgcacacctttagttaatgcttaaaacattatgttgtagtgtgtcttg 45394576  T
Q  110 gttaaaataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagc 209  Q
    ||||||||||              |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  45394577 gttaaaataa--------------catcttgtgcagaagttttggttagaaaggaaccggatggggaagagaaaaggaaaggaacgtgattgtgtgtagc 45394662  T
Q  210 aacttaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattga 309  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||||    
T  45394663 aaggtaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccatcgacgaggtacttaattga 45394762  T
Q  310 accctcaccctaaaatccac 329  Q
    ||||||||||||||||||||    
T  45394763 accctcaccctaaaatccac 45394782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 2460981 - 2460848
Alignment:
Q  196 tgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtg 295  Q
    |||||||||| |||||  |||| ||||||||||||||||||||||||||||||||| |  |||||||| |||||||| |||||||||| |||||| ||||    
T  2460981 tgattgtgtgtagcaatataaagttgttctcatttttaattttcaacaaaatctaaccactaattaaacctaacgttgttttattcatggtccactggtg 2460882  T
Q  296 agggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||| || | |||||| |||| |||||||    
T  2460881 agggacttagttcagccctcatcctagaatccac 2460848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 24666832 - 24666899
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||| |||| |||||| ||||| ||||||| | ||||||||||||||||||||||||||| |||||||    
T  24666832 aatcaaacggtatttttttcatggtccaccagggagggacttaattgaaccctcaccctataatccac 24666899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 51386494 - 51386457
Alignment:
Q  292 ggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51386494 ggtgagggacttaattgaaccctcaccctaaaatccac 51386457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 34941579 - 34941503
Alignment:
Q  253 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||| ||| |||| |||| |||||| |||||  |||||  ||||||||||||||||||||||||||||| |||||||    
T  34941579 cgttgattcaatcaaacggtattttcttcatgatccactagtgagggacttaattgaaccctcaccctagaatccac 34941503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 5227978 - 5227887
Alignment:
Q  141 tgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcattttt 232  Q
    ||||||| ||||||||||| |||||   |||||||| |||||| ||||||| || |||||||||| || ||  |||| ||||||||||||||    
T  5227978 tgcagaatttttggttagagaggaatgtgatggggacgagaaacggaaagggacatgattgtgtgtagaaatctaaaattgttctcattttt 5227887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 18363643 - 18363697
Alignment:
Q  272 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatc 326  Q
    |||||| ||| | |||||||||||||| |||||||||||||||||||||| ||||    
T  18363643 tattttcttcgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 24666204 - 24666130
Alignment:
Q  255 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||| ||| || | ||||||  |||| || |||||||||||||||||||||| ||||||||||| |||||||    
T  24666204 ttaattagatcgaatggtatttttgtcatggttcaccggtgagggacttaattgatccctcaccctagaatccac 24666130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 36599285 - 36599231
Alignment:
Q  272 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatc 326  Q
    |||||| ||| | |||||||||||||| |||||||||||||||||||||| ||||    
T  36599285 tattttcttcgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 53778395 - 53778461
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    ||||||||| |||||  ||| | ||||||||||||||||||||| || |||||||||||| ||||||    
T  53778395 aatctaacgatatttccttcgtggtccaccggtgagggacttaaatggaccctcaccctagaatcca 53778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 14527582 - 14527623
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  14527582 caccggtgagggacttaattgatccctcaccctagaatccac 14527623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 6057002 - 6057046
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||| | |||||||||||||| |||||||    
T  6057002 gtccaccggtgagggacttagtagaaccctcaccctagaatccac 6057046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 13924838 - 13924794
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||    
T  13924838 gtccaccggtgagggatttaattgagccctcaccctagaatccac 13924794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 26354235 - 26354271
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26354235 gtccacctgtgagggacttaattgaaccctcacccta 26354271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 53777866 - 53777822
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||    
T  53777866 gtccaccggtgagagacttaattggaccctcatcctaaaatccac 53777822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 25055165 - 25055110
Alignment:
Q  274 ttttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||| ||||| |||||||  ||||| |||||||||||||||||||||| |||||||    
T  25055165 tttttttcatggtccaccaatgaggaacttaattgaaccctcaccctagaatccac 25055110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 34450859 - 34450824
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcacccta 321  Q
    |||||||||||||||||||||||| |||||||||||    
T  34450859 tccaccggtgagggacttaattgatccctcacccta 34450824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 42792819 - 42792776
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||| |||||||||||||||||| |||||||||||| |||||||    
T  42792819 tccatcggtgagggacttaattggaccctcaccctagaatccac 42792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 47156677 - 47156642
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||| ||||||||||||||||||||||||||||    
T  47156677 tccaccgatgagggacttaattgaaccctcacccta 47156642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 47157383 - 47157418
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||| ||||||||||||||||||||    
T  47157383 tccaccggtgagggatttaattgaaccctcacccta 47157418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 52129465 - 52129422
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| |||||||||||||||||||||||||| || |||||||    
T  52129465 tccaccagtgagggacttaattgaaccctcaccttagaatccac 52129422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 47764077 - 47764147
Alignment:
Q  258 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    ||||||||| | | ||| || ||||| |||||||||||||||| || |||||||||| |||||| ||||||    
T  47764077 attaaatcttatggtatatttttcatggtccaccggtgagggatttgattgaacccttaccctagaatcca 47764147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 20143321 - 20143280
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||| |||| ||||||||||| |||||||    
T  20143321 caccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 34451443 - 34451484
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||| |||||||||| ||||||||||| |||||||    
T  34451443 caccggtgaggtacttaattgatccctcaccctagaatccac 34451484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 51387131 - 51387172
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||| ||||||| ||||||||||| |||||||    
T  51387131 caccggtgagggacgtaattgatccctcaccctataatccac 51387172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 6244562 - 6244526
Alignment:
Q  294 tgagggacttaattgaaccctcaccctaaaatccacg 330  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  6244562 tgagggacttaattgaaccttcaccctataatccacg 6244526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 21837430 - 21837390
Alignment:
Q  289 accggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  21837430 accggtgagggacttagttggaccctcaccctagaatccac 21837390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 25725811 - 25725847
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||||||||||  |||||||||||    
T  25725811 gtccaccggtgagggacttaattgctccctcacccta 25725847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 49 - 329
Target Start/End: Complemental strand, 20606559 - 20606287
Alignment:
Q  49 tccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgcagaag 148  Q
    |||||||||||||||||||||||| ||||  ||||||| ||||||||| | ||| |||  ||||| ||||| ||||||||| |||||| ||||||||||     
T  20606559 tccatatttccattgcacaccttcgattatggcttaaatcattatgttttagtgtgtcgaggttagaataagctatggcagaaaccat-ttgtgcagaa- 20606462  T
Q  149 ttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaaatc 248  Q
    ||||||||||||||||||       |||||||||||||||| | | || |||||||| |||||  |||| |||||||||||||| ||||| |||||||||    
T  20606461 ttttggttagaaaggaact------ggaagagaaaaggaaaaggatgtaattgtgtgtagcaatgtaaagttgttctcattttttatttttaacaaaatc 20606368  T
Q  249 taaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||    
T  20606367 taaccattaattaaatctaacgttattttattcacagtccatcggtgagggacttaattaaaccctcaccctaaaatccac 20606287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 45 - 317
Target Start/End: Complemental strand, 40584019 - 40583763
Alignment:
Q  45 caagtccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgca 144  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||| ||                | ||| | |||| ||| ||||||||||||    
T  40584019 caagtccatatttccattgcacaccttcaattatcgcttaaagcattatgttatgc---------------aaaatttttggccgcagccatcttgtgca 40583935  T
Q  145 gaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaa 244  Q
    ||| ||||||||||||||||| || |||||||||||||||||||||  |||||||||| || |||||| |||| ||||||| ||||||| ||||||||||    
T  40583934 gaatttttggttagaaaggaatcatatggggaagagaaaaggaaagcgacgtgattgtatgtagcaacgtaaagttgttct-atttttatttttcaacaa 40583836  T
Q  245 aatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcac 317  Q
    ||||||| |||||||||||||||| |||||||||||||  ||||| || ||| |||||||||| |||||||||    
T  40583835 aatctaaccgttaattaaatctaatgttattttattcacggtccatcgatgaaggacttaattcaaccctcac 40583763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 143 - 325
Target Start/End: Original strand, 38138589 - 38138770
Alignment:
Q  143 cagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaac 242  Q
    ||||| ||||||||||| ||||| | |||||||| |||||| ||||||| || |||||||||| || ||  |||| ||||| | ||||||  |||  ||     
T  38138589 cagaatttttggttagagaggaatccgatggggaggagaaacggaaagggacatgattgtgtgtagaaatctaaagttgtttttatttttgtttt--aag 38138686  T
Q  243 aaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaat 325  Q
     |||||| |||  ||||||||||| || | ||||||||||||  |||||| |||||||||||||||||| ||||||| ||||||    
T  38138687 taaatctgaaccattaattaaatcaaatggtattttattcatgatccaccagtgagggacttaattgaatcctcaccttaaaat 38138770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 23458597 - 23458669
Alignment:
Q  255 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcc 327  Q
    ||||||||||| ||||||||||| || || ||| ||||||||||||||||||| |||||||||| || |||||    
T  23458597 ttaattaaatccaacgttatttttttaatggtctaccggtgagggacttaattaaaccctcaccgtagaatcc 23458669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 6873564 - 6873523
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  6873564 caccggtaagggacttaattgaaccctcaccctaaaatccac 6873523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 127741 - 127782
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccac 127782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 20606927 - 20606960
Alignment:
Q  288 caccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||||||||||||||||||||    
T  20606927 caccggtgagggacttaattgaaccctcacccta 20606960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 7754970 - 7755014
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||| |||||||||||| ||||||||||| |||||||    
T  7754970 gtccaccggtgaaggacttaattgatccctcaccctagaatccac 7755014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Original strand, 18537497 - 18537540
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||||||||| | || |||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccac 18537540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 29388957 - 29388995
Alignment:
Q  291 cggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||| || |||||||||||||||||||    
T  29388957 cggtgagggacttaatagagccctcaccctaaaatccac 29388995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 44297423 - 44297453
Alignment:
Q  291 cggtgagggacttaattgaaccctcacccta 321  Q
    |||||||||||||||||||||||||||||||    
T  44297423 cggtgagggacttaattgaaccctcacccta 44297453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 10173978 - 10173937
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||  |||||||||||||| |||||||    
T  10173978 caccggtgagggacttaacagaaccctcaccctagaatccac 10173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 127078 - 127034
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| | ||||||||||| |||||||||||||||| |||||||    
T  127078 gtccactgatgagggacttagttgaaccctcaccctagaatccac 127034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 2655766 - 2655730
Alignment:
Q  293 gtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  2655766 gtgagggatttaattgaaccctcaccttaaaatccac 2655730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 30201991 - 30202035
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||  |||||||| || |||||||    
T  30201991 gtccaccggtgagggacttaattgctccctcaccttagaatccac 30202035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 44296905 - 44296869
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  44296905 gtccaccagtgagggacttaattggaccctcacccta 44296869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 80 - 329
Target Start/End: Complemental strand, 30580884 - 30580636
Alignment:
Q  80 gcttaaagcattatgttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaaga 179  Q
    ||||||| ||||||||| | ||| |||  ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||    
T  30580884 gcttaaatcattatgttttagtgtgtcgaggttagaataatctatggcagcaaccatcttgtgcagaa-ttttggttagaaaggaact------ggaaga 30580792  T
Q  180 gaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttat 279  Q
    |||||||||| | |||| |||||||| |||||  |||| |||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||    
T  30580791 gaaaaggaaaaggacgtaattgtgtgtagcaatataaagttgttctcattttttatttttaacaaaatctaaccattaattaaatctaacgttattttat 30580692  T
Q  280 tcatagtccac------cggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||      ||||||| ||||||||| ||||||||||||| |||||||    
T  30580691 tcatagtccaccggtaacggtgagagacttaattaaaccctcaccctagaatccac 30580636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 49 - 328
Target Start/End: Original strand, 43660150 - 43660425
Alignment:
Q  49 tccatatttccattgcacaccttcaattaatgcttaaagcattat---gttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgcag 145  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||   ||| | ||| |||  ||||| ||||||||||| ||| |||||||||||||||    
T  43660150 tccatatttccattgcacaccttctattaaggcttaaatcattattatgttttagtgtgtcgaggttagaataatctatgacagaaaccatcttgtgcag 43660249  T
Q  146 aagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaa 245  Q
    || ||||||||||||||||||      ||||||||||||||||| | |||| |||||||| | |||  |||| ||||||| |||||| ||||| ||||||    
T  43660250 aa-ttttggttagaaaggaact-----gggaagagaaaaggaaaaggacgtaattgtgtgtaccaatgtaaagttgttct-attttttatttttaacaaa 43660342  T
Q  246 atctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||  | || ||||||| ||||||    
T  43660343 atctaaccattaattaaatctaacgttattttattcatggtccaccggtgagggacttaattataaccacaccctagaatcca 43660425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 329
Target Start/End: Original strand, 36611434 - 36611541
Alignment:
Q  222 ttctcatttttaattttcaacaaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccct 320  Q
    ||||||||||| ||||| || |||||||||||  |||||||||||||| | |||||| ||||| ||||||||||||| || |||||||||||||||||||    
T  36611434 ttctcattttttattttaaa-aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagagatttaattgaaccctcaccct 36611532  T
Q  321 aaaatccac 329  Q
    | |||||||    
T  36611533 agaatccac 36611541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 767956 - 768013
Alignment:
Q  272 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||    
T  767956 tatttttttcgtggtccaccggtgagggacttaattggaccctcaccctaaaatccac 768013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 46491678 - 46491735
Alignment:
Q  272 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| || ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  46491678 tatttttttgatagtccaccggtgagggacttagttgaaccctcaccctagaatccac 46491735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 767204 - 767137
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||| | |||| |||||  ||||||||||||||||||||||| |||||||||||| |||||||    
T  767204 aatctaacggtgtttttttcatgatccaccggtgagggacttaattggaccctcaccctagaatccac 767137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 41965758 - 41965824
Alignment:
Q  263 atctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||| |||||  ||| | |||||||||||||||||||||||| |||||||||||| |||||||    
T  41965758 atctaacggtatttccttcgtggtccaccggtgagggacttaattggaccctcaccctagaatccac 41965824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 42818557 - 42818592
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||||||||||||||||||||||    
T  42818557 tccaccggtgagggacttaattgaaccctcacccta 42818592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 24874559 - 24874625
Alignment:
Q  263 atctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||| ||||||  || | |||||||| |||||||| ||||||||||||||||||| |||||||    
T  24874559 atctaacggtatttttctcgtggtccaccgatgagggacctaattgaaccctcaccctagaatccac 24874625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 41358386 - 41358312
Alignment:
Q  255 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| |||| |||  |||||||||||| ||||| ||||||||||||||||||| |||||| || | |||||||    
T  41358386 ttaatttaatccaaccatattttattcatggtccatcggtgagggacttaattgatccctcatccaagaatccac 41358312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 3314997 - 3314956
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  3314997 caccggtgagggacttaattgaaccctcaccgtagaatccac 3314956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 17114187 - 17114146
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatccac 17114146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 36611593 - 36611560
Alignment:
Q  288 caccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||||||||||||||||||||    
T  36611593 caccggtgagggacttaattgaaccctcacccta 36611560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 41358965 - 41359018
Alignment:
Q  276 ttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||| |||||||    
T  41358965 ttattcatggtccactggtgatggacttaattgatccctcaccctagaatccac 41359018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 9147179 - 9147103
Alignment:
Q  253 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||| | |||||| |||||  |||||| ||||||||| || ||||||||||| | || |||||||    
T  9147179 cgttaattaaatctaagggtattttgttcatgttccaccagtgagggacctagttgaaccctcatcttagaatccac 9147103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 28007202 - 28007158
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||    
T  28007202 gtccaccggtgagggacttaattgctccctcaccctagaatccac 28007158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 7329072 - 7329107
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcacccta 321  Q
    |||||| |||||||||||||||||||||||||||||    
T  7329072 tccaccagtgagggacttaattgaaccctcacccta 7329107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 325
Target Start/End: Original strand, 36611750 - 36611781
Alignment:
Q  294 tgagggacttaattgaaccctcaccctaaaat 325  Q
    ||||||||||||||||||||||||||||||||    
T  36611750 tgagggacttaattgaaccctcaccctaaaat 36611781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 41965180 - 41965113
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||| |||||  ||| | |||||||  ||||||||||||||| |||||||||||| |||||||    
T  41965180 aatctaacggtatttccttcgtggtccaccaatgagggacttaattggaccctcaccctagaatccac 41965113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 44876937 - 44876980
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||    
T  44876937 gtccatcggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 41617243 - 41617193
Alignment:
Q  279 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| ||||||||||||||||||||||||| | ||||| ||| |||||||    
T  41617243 ttcatggtccaccggtgagggacttaattgatcactcactctagaatccac 41617193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 9147838 - 9147891
Alignment:
Q  258 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaac 311  Q
    |||||||| |||||||||||  | || | |||||||||||||||||||||||||    
T  9147838 attaaatccaacgttatttttctaatggaccaccggtgagggacttaattgaac 9147891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 10590340 - 10590299
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  10590340 caccgatgagggacttaattgaactctcaccctagaatccac 10590299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Original strand, 30581276 - 30581305
Alignment:
Q  292 ggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||||||||||||||||    
T  30581276 ggtgagggacttaattgaaccctcacccta 30581305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 46491048 - 46491011
Alignment:
Q  292 ggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  46491048 ggtgatggacttaattgaaccctcaccctacaatccac 46491011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 3315470 - 3315510
Alignment:
Q  289 accggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||| |||||||| || |||||||    
T  3315470 accggtgagggacttaattgagccctcaccttagaatccac 3315510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 16718967 - 16719041
Alignment:
Q  255 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| || |||||||| |||||||    
T  16718967 ttaattaaatctaacgatattttgttcatggtccaccggtgagggacttaattgatccgtcaccctagaatccac 16719041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 5312969 - 5313045
Alignment:
Q  253 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||| ||| | |||||| |||||  ||||||||||| |||| || ||||||||||| | ||||||||||    
T  5312969 cgttaattaaatttaagggtattttgttcatgttccaccggtgaaggacctagttgaaccctcatcttaaaatccac 5313045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 5312313 - 5312254
Alignment:
Q  258 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcac 317  Q
    |||||||| |||||||||||  | || | |||| ||||||||||||||||||||||||||    
T  5312313 attaaatccaacgttatttttctaatggaccactggtgagggacttaattgaaccctcac 5312254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 10965298 - 10965231
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||| | ||||||  |||| |||||||| |||| |||||||||| ||| ||||||||||||||||    
T  10965298 aatctaatggtatttttctcatggtccaccgatgagagacttaattggaccttcaccctaaaatccac 10965231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 2138522 - 2138486
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  2138522 gtccaccggtgagggacctaattggaccctcacccta 2138486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 10966383 - 10966427
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||    
T  10966383 gtccaccggtgagggacctaattggaccttcaccctagaatccac 10966427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 26240851 - 26240918
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  26240851 aatcaaacggtattttcttcatggtccaccggtgagggacttaattgaaccctcaccctagaatccac 26240918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 12449315 - 12449359
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  12449315 gtccaccggtgagggacttaattgatccctcaccctaaaatccac 12449359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 16449597 - 16449556
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccac 16449556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 16459171 - 16459130
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccac 16459130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 26240189 - 26240115
Alignment:
Q  255 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||| ||| || | ||||||  |||| || |||||||||||||||||||||| ||||||||||| |||||||    
T  26240189 ttaattagatcgaagggtatttttgtcatggttcaccggtgagggacttaattgatccctcaccctagaatccac 26240115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 31109286 - 31109240
Alignment:
Q  283 tagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||    
T  31109286 tagtccaccggtgagggacctaattggaccctcaccctagaatccac 31109240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 31116685 - 31116731
Alignment:
Q  283 tagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||    
T  31116685 tagtccaccggtgagggacctaattggaccctcaccctagaatccac 31116731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 24847825 - 24847784
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  24847825 caccggtgagggacttaatagaaccctcaccctagaatccac 24847784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 24848432 - 24848473
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  24848432 caccggtgagggacttaatagaaccctcaccctagaatccac 24848473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Original strand, 27746162 - 27746205
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccac 27746205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 27745595 - 27745557
Alignment:
Q  291 cggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||||||| || |||||||    
T  27745595 cggtgagggacttaattgaaccctcaccttagaatccac 27745557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 51547643 - 51547593
Alignment:
Q  279 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||||||| |||||||||||| |||| |||||||| |||||||    
T  51547643 ttcatggtccaccggtaagggacttaattaaaccatcaccctagaatccac 51547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 2260894 - 2260857
Alignment:
Q  289 accggtgagggacttaattgaaccctcaccctaaaatc 326  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  2260894 accggtgagggacttgattgaaccctcaccctagaatc 2260857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 2261553 - 2261586
Alignment:
Q  292 ggtgagggacttaattgaaccctcaccctaaaat 325  Q
    |||||||| |||||||||||||||||||||||||    
T  2261553 ggtgaggggcttaattgaaccctcaccctaaaat 2261586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 14166914 - 14166951
Alignment:
Q  289 accggtgagggacttaattgaaccctcaccctaaaatc 326  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  14166914 accggtgagggacttaattgagccctcaccctagaatc 14166951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 46253668 - 46253627
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||| |||||| ||||| |||||||||||||||||||    
T  46253668 caccggtgaaggacttgattgatccctcaccctaaaatccac 46253627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 43552995 - 43553039
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||| |||||||||||| ||||||||||| |||||||    
T  43552995 gtccatcggtgaaggacttaattgatccctcaccctataatccac 43553039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 22632397 - 22632323
Alignment:
Q  255 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||| | || | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  22632397 ttaattaaatctaacggttttattttcatggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 22632965 - 22633015
Alignment:
Q  279 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  22632965 ttcatggtccaccggtgagggacttaattgatccctcaccctagaatccac 22633015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 42664000 - 42664040
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaat 325  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  42664000 gtccaccagtgagggacttaattgaaccctcaccctaaaat 42664040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 26847169 - 26847098
Alignment:
Q  258 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||| | |||||| | | | || ||||||||||||||||||||| |||||||||||| |||||||    
T  26847169 attaaatctaatggtattttttccgtggttcaccggtgagggacttaattggaccctcaccctagaatccac 26847098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 4402293 - 4402334
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  4402293 caccggtgagggacttaatagaaccctcaccctagaatccac 4402334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 16911052 - 16911093
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  16911052 caccggtgagggacttaattgagccctcaccctagaatccac 16911093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 42094051 - 42094010
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccac 42094010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 5434077 - 5434033
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||    
T  5434077 gtccaccggtgaaggacttaattggaccctcaccctagaatccac 5434033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 36402246 - 36402202
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||    
T  36402246 gtccaccggtgtgggacctaattggaccctcaccctaaaatccac 36402202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 5434749 - 5434816
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||| |||||  ||||| |||||||| ||||||||||||||| || ||||| ||| |||||||    
T  5434749 aatctaacggtatttccttcatggtccaccgatgagggacttaattggactctcactctagaatccac 5434816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 202619 - 202586
Alignment:
Q  288 caccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||||||||||||||| ||||    
T  202619 caccggtgagggacttaattgaaccctcatccta 202586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 317456 - 317423
Alignment:
Q  288 caccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||||||||||||||||||||| ||||    
T  317456 caccggtgagggacttaattgaaccctcatccta 317423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 35347707 - 35347666
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||    
T  35347707 caccggtaagggacttaatagaaccctcatcctaaaatccac 35347666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 36180729 - 36180696
Alignment:
Q  288 caccggtgagggacttaattgaaccctcacccta 321  Q
    |||||||||||||||||||| |||||||||||||    
T  36180729 caccggtgagggacttaattaaaccctcacccta 36180696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 16718381 - 16718413
Alignment:
Q  286 tccaccggtgagggacttaattgaaccctcacc 318  Q
    |||||||||||||||||||||||| ||||||||    
T  16718381 tccaccggtgagggacttaattgagccctcacc 16718413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 27243491 - 27243447
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||| ||||| || || |||||||    
T  27243491 gtccaccggtgagggacttaattgatccctcgccttataatccac 27243447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 27255066 - 27255022
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||| ||||| || || |||||||    
T  27255066 gtccaccggtgagggacttaattgatccctcgccttataatccac 27255022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 36403028 - 36403072
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||| |||||| |||||||| ||| |||||||    
T  36403028 gtccaccggtgagggacctaattggaccctcactctagaatccac 36403072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 20807979 - 20807938
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  20807979 caccggtgagggacttaattgaaccctcaccctagaatccac 20807938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 54308495 - 54308454
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  54308495 caccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 9830617 - 9830573
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||||||||||||| | |||||||    
T  9830617 gtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 15287612 - 15287568
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||||| |||||||||||| |||||||    
T  15287612 gtccaccggtgagggacttaattggaccctcaccctagaatccac 15287568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 24512039 - 24511995
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  24512039 gtccaccggtgagggacttaattgctccctcaccctaaaatccac 24511995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 4706962 - 4707003
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  4706962 caccggtgagggacttaatagaaccctcaccctagaatccac 4707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 20808613 - 20808654
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  20808613 caccggtgagggacttacttgaaccctcaccctagaatccac 20808654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 47571238 - 47571197
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccac 47571197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 49349718 - 49349677
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccac 49349677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 49350276 - 49350317
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| ||||||||||||||||||||||||||| |||||||    
T  49350276 caccggcgagggacttaattgaaccctcaccctagaatccac 49350317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 29516525 - 29516585
Alignment:
Q  258 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacc 318  Q
    |||||||| ||| |||||||  | || | ||||||||||||||||||||||||||||||||    
T  29516525 attaaatccaacattatttttctaatggaccaccggtgagggacttaattgaaccctcacc 29516585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 38557237 - 38557277
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  38557237 caccggtgagggacttaatagagccctcaccctaaaatcca 38557277  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 54754292 - 54754368
Alignment:
Q  253 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||| ||| | |||||| |||||  ||||||||||| |||| || ||||||||||| | ||||||||||    
T  54754292 cgttaattaaatttaagggtattttgttcatgttccaccggtgaaggacctagttgaaccctcatcttaaaatccac 54754368  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 53346472 - 53346531
Alignment:
Q  258 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcac 317  Q
    |||||||| ||| |||||||  | || | |||||||||||||||||||||||||||||||    
T  53346472 attaaatccaacattatttttctaatggaccaccggtgagggacttaattgaaccctcac 53346531  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 43479501 - 43479555
Alignment:
Q  272 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatc 326  Q
    |||||| ||||| ||||| || |||| ||||||||||||||||||||||| ||||    
T  43479501 tattttcttcatggtccatcgatgagagacttaattgaaccctcaccctagaatc 43479555  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 47571912 - 47571978
Alignment:
Q  255 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||||||||| |||  || ||| |||||  | |||||||||||||||||||||| |||||||||||    
T  47571912 ttaattaaatccaactgtaatttcttcatgtttcaccggtgagggacttaattgatccctcacccta 47571978  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 4706319 - 4706278
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||| ||||||| || |||||||||||||||||||    
T  4706319 caccggtgaggtacttaatagagccctcaccctaaaatccac 4706278  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 18745376 - 18745409
Alignment:
Q  288 caccggtgagggacttaattgaaccctcacccta 321  Q
    |||||||||||||||| |||||||||||||||||    
T  18745376 caccggtgagggacttgattgaaccctcacccta 18745409  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 48626127 - 48626160
Alignment:
Q  295 gagggacttaattgaaccctcaccctaaaatcca 328  Q
    ||||||||||||||||||||||||||| ||||||    
T  48626127 gagggacttaattgaaccctcaccctagaatcca 48626160  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 53242724 - 53242667
Alignment:
Q  272 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| ||| | |||||||| ||||||||||||||||  |||||||||| |||||||    
T  53242724 tattttcttcgtggtccaccgatgagggacttaattgattcctcaccctataatccac 53242667  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 53343862 - 53343903
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||||||||||  |||||||||||||||| |||||||    
T  53343862 caccggtgagggacttgtttgaaccctcaccctagaatccac 53343903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 53344747 - 53344788
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  53344747 caccggtgagggacttgattgatccctcaccctagaatccac 53344788  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 2226706 - 2226746
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    |||| |||||||| |||||||||||||||||||| ||||||    
T  2226706 cacctgtgagggaattaattgaaccctcaccctagaatcca 2226746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 9831265 - 9831309
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||| |||||||||||||||| |||||||||| | |||||||    
T  9831265 gtccaccagtgagggacttaattggaccctcaccccagaatccac 9831309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 14746086 - 14746042
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||||||| |||||| ||||||| |||||||||||| |||||||    
T  14746086 gtccaccggggagggatttaattggaccctcaccctagaatccac 14746042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 14746882 - 14746938
Alignment:
Q  262 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacc 318  Q
    ||||||||| | |||| ||| | |||||||| ||||||||||||||| |||||||||    
T  14746882 aatctaacggtgtttttttcgtggtccaccgatgagggacttaattggaccctcacc 14746938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 35982545 - 35982513
Alignment:
Q  283 tagtccaccggtgagggacttaattgaaccctc 315  Q
    |||||| ||||||||||||||||||||||||||    
T  35982545 tagtccgccggtgagggacttaattgaaccctc 35982513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 43453484 - 43453440
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    ||||| |||||||||| ||||||| |||||||||||| |||||||    
T  43453484 gtccagcggtgagggatttaattggaccctcaccctagaatccac 43453440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 43454164 - 43454208
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 329  Q
    |||||| |||||||||| |||||| |||||||||||| |||||||    
T  43454164 gtccacaggtgagggacctaattggaccctcaccctagaatccac 43454208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 47677563 - 47677523
Alignment:
Q  288 caccggtgagggacttaattgaaccctcaccctaaaatcca 328  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  47677563 caccagtgagggacttaattgaaccctcatcctagaatcca 47677523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 51920759 - 51920723
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  51920759 gtccatcggtgagggacttaattggaccctcacccta 51920723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 54753649 - 54753589
Alignment:
Q  258 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacc 318  Q
    |||||||| |||||||||||  | ||   |||| |||||||||||||||||||||||||||    
T  54753649 attaaatccaacgttatttttctaatgaaccactggtgagggacttaattgaaccctcacc 54753589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 6509 - 6473
Alignment:
Q  285 gtccaccggtgagggacttaattgaaccctcacccta 321  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6509 gtccatcggtgagggacttaattgaaccctcacccta 6473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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