View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2775_high_3 (Length: 341)
Name: NF2775_high_3
Description: NF2775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2775_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 44360779 - 44361093
Alignment:
| Q |
11 |
cagagactattgagagatgcaataatatgaatataggtatattgtaattagatttgattacctgaggggtgctacgggggtaatgaatagaaccagagaa |
110 |
Q |
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| T |
44360779 |
cagagactattgagagatgcaataatatgaatataggtatattgtacgtagatttgattacctgaggggtgctacgggggtaatgaatagaaccagagaa |
44360878 |
T |
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| Q |
111 |
gagaatatttctttgtccattgatgataagggatcttccatcatatgttacctcttctgcacctttgactccaaaacttaattccaatattgctaccaac |
210 |
Q |
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| T |
44360879 |
gagaatatttctttgtccattgatgataagagatcttccatcatatgttacctcttctgcacctttgactccaaaacttaattccaatattgctaccaac |
44360978 |
T |
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| Q |
211 |
atcatcatcaaacacacccatttttccatctccactaatttaatttgtcatacctctttagttatcttaataatactcctatgtgacactgcaaattaag |
310 |
Q |
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| T |
44360979 |
atcatcatcaaacacacccatttttccatctccactaatttaatttgtcacacctctttagttatcttaataatactcctatttgacactgcaaattaag |
44361078 |
T |
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| Q |
311 |
ctatatgtatgtata |
325 |
Q |
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| T |
44361079 |
ctatatgtatatata |
44361093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 40097615 - 40097571
Alignment:
| Q |
69 |
tacctgaggggtgctacgggggtaatgaatagaaccagagaagag |
113 |
Q |
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| T |
40097615 |
tacctgaggagtgctacgaggataatgaattgaaccagagaagag |
40097571 |
T |
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