View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2775_low_11 (Length: 228)

Name: NF2775_low_11
Description: NF2775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2775_low_11
NF2775_low_11
[»] chr1 (4 HSPs)
chr1 (57-214)||(25477007-25477164)
chr1 (57-196)||(25466603-25466742)
chr1 (60-150)||(39831822-39831916)
chr1 (18-59)||(25469553-25469594)
[»] chr5 (1 HSPs)
chr5 (57-211)||(40088396-40088550)
[»] chr4 (2 HSPs)
chr4 (57-211)||(54186852-54187006)
chr4 (119-211)||(8571954-8572046)
[»] chr6 (1 HSPs)
chr6 (57-192)||(30948635-30948770)
[»] chr3 (1 HSPs)
chr3 (119-211)||(28697914-28698006)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 25477164 - 25477007
Alignment:
Q  57 gataccgtgaattttatcaatgtgactttgatattgctggttcatctgcaaaaatggctccagattttgaggttgttagaattttgactgaattgcttga 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25477164 gataccgtgaattttatcaatgtgactttgatattgctggttcatctgcaacaatggctccagattttgaggttgttagaattttgacttaattgcttga 25477065  T
Q  157 tgagctgaaaattggggattttgaggtaaatttttataactctcctgctgcaaaatat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25477064 tgagctgaaaattggggattttgaggtaaatttttataactctcctgctgcaaaatat 25477007  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 25466742 - 25466603
Alignment:
Q  57 gataccgtgaattttatcaatgtgactttgatattgctggttcatctgcaaaaatggctccagattttgaggttgttagaattttgactgaattgcttga 156  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25466742 gataccgtgaattttatcaatgtgactttgatattgctggtccagctgaaaaaatggctccagattttgaggttgttagaattttgactgaattgcttga 25466643  T
Q  157 tgagctgaaaattggggattttgaggtaaatttttataac 196  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  25466642 tgagctgaacattggggattttgaggtaaatgtttataac 25466603  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 39831822 - 39831916
Alignment:
Q  60 accgtgaattttatcaatgtgactttgatattgctggttcatctgcaaaaat-ggc---tccagattttgaggttgttagaattttgactgaatt 150  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||  ||   ||||||||||||||||||||||||||||||| ||||    
T  39831822 accgtgaattttatcaatgtgactttgatattgcaggttcatcagcaaaaatcagctcatccagattttgaggttgttagaattttgacttaatt 39831916  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 25469594 - 25469553
Alignment:
Q  18 gaagaagaagaaagctgttttggggaagggaactagttcgat 59  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  25469594 gaagaagaagaaagctgtcttggggaaaggaactagttcgat 25469553  T

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Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 40088550 - 40088396
Alignment:
Q  57 gataccgtgaattttatcaatgtgactttgatattgctggttcatctgcaaaaatggctccagattttgaggttgttagaattttgactgaattgcttga 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40088550 gataccgtgaattttatcaatgtgactttgatattgctggttcatatgaaaaaatggctccagattttgaggttgttagaattttgactgaattgcttga 40088451  T
Q  157 tgagctgaaaattggggattttgaggtaaatttttataactctcctgctgcaaaa 211  Q
    |||||| || ||||||||||||||||||||||||||||||  ||||||| |||||    
T  40088450 tgagctcaacattggggattttgaggtaaatttttataacattcctgcttcaaaa 40088396  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 54187006 - 54186852
Alignment:
Q  57 gataccgtgaattttatcaatgtgactttgatattgctggttcatctgcaaaaatggctccagattttgaggttgttagaattttgactgaattgcttga 156  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||  ||||    
T  54187006 gataccctgaattttatcaatgtggctttgatattgctggttcatctaaaaaaatggctccagattttgaggttgttagaattttgacttaattagttga 54186907  T
Q  157 tgagctgaaaattggggattttgaggtaaatttttataactctcctgctgcaaaa 211  Q
    ||||||||| ||||||||||| |||||||| |||||||||  ||||||| |||||    
T  54186906 tgagctgaacattggggatttggaggtaaacttttataacattcctgctacaaaa 54186852  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 8571954 - 8572046
Alignment:
Q  119 gattttgaggttgttagaattttgactgaattgcttgatgagctgaaaattggggattttgaggtaaatttttataactctcctgctgcaaaa 211  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||| ||||| ||||| |||||||| |||||||||  ||||||| |||||    
T  8571954 gattttgaggttgttagaattttgacttaattagttgatgagctgaacattggtgatttggaggtaaacttttataacattcctgctacaaaa 8572046  T

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Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 30948635 - 30948770
Alignment:
Q  57 gataccgtgaattttatcaatgtgactttgatattgctggttcatctgcaaaaatggctccagattttgaggttgttagaattttgactgaattgcttga 156  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||  ||||    
T  30948635 gataccctgaattttatcaatgtgactttgatactgctggttcatgtgaaaaaatggctccagatttcgaggttgttagaattttgacttaattagttga 30948734  T
Q  157 tgagctgaaaattggggattttgaggtaaattttta 192  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30948735 tgagctgaacattggggattttgaggtaaattttta 30948770  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 28697914 - 28698006
Alignment:
Q  119 gattttgaggttgttagaattttgactgaattgcttgatgagctgaaaattggggattttgaggtaaatttttataactctcctgctgcaaaa 211  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||| ||||| ||||| |||||||| |||||||||  ||||||| |||||    
T  28697914 gattttgaggttgttagaattttgacttaattagttgatgagctgaacattggtgatttggaggtaaacttttataacattcctgctacaaaa 28698006  T

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