View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2775_low_12 (Length: 225)
Name: NF2775_low_12
Description: NF2775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2775_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 2834679 - 2834872
Alignment:
| Q |
16 |
tgaaatcaggcccggtgcaggcaaccagtttagatagtataagacnnnnnnnggcttcaaaacgatagtagcatcgatcttggttagcnnnnnnnncgat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2834679 |
tgaaatcaggcccggtgcaggcaaccagtttagatagtataagactttttttggcttcaaaacgatagtagcatcgatcttggttagcaaaaaaaacgat |
2834778 |
T |
|
| Q |
116 |
agtagagcgaagtgtctaactttgaatttttaaataaatagttggtgaggaaatgatggatggatgaaaccggttggctgagacgcatacatat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2834779 |
agtagagcgaagtgtctaactttgaatttttaaataaatagttggtgaggaaatgatggatggatgaaaccggttggctgagacgcatacatat |
2834872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 2834621 - 2834666
Alignment:
| Q |
122 |
gcgaagtgtctaactttgaatttttaaataaatagttggtgaggaa |
167 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
2834621 |
gcgaagtgtctgactttgaatttttaaataaatagttggcgaggaa |
2834666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 2821533 - 2821490
Alignment:
| Q |
165 |
gaaatgatggatggatgaaaccggttggctgagacgcatacata |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
2821533 |
gaaatgatgggtggatgaaaccggttggctgagacacatacata |
2821490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 2810169 - 2810124
Alignment:
| Q |
119 |
agagcgaagtgtctaactttgaatttttaaataaatagttggtgag |
164 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||| |||||| |
|
|
| T |
2810169 |
agagcgaagtgtatgactttgaatttataaataaatagtcggtgag |
2810124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University