View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2775_low_3 (Length: 408)
Name: NF2775_low_3
Description: NF2775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2775_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 122 - 398
Target Start/End: Complemental strand, 49541668 - 49541394
Alignment:
| Q |
122 |
tgattatggctatcattttacaaaatagtcataatttttattgcctgctaggaatttctcatgaaataataacttcatattatcttaaatttaattnnnn |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49541668 |
tgattatggctatcattttacaaaatagtcataatttttattgcctgctaggaatttctcatgaaataataacttcatattatcttaaatttaattaaaa |
49541569 |
T |
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| Q |
222 |
nnngaaccaaacaacaactcatcagacattggggtatatcaatactttgtttggtaataacgtttctaatcgaacttatgttcagtgtccgacactaaca |
321 |
Q |
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|||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||| |
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| T |
49541568 |
aaagaaccaaacaacaactcatcagacattgtggtatttcagtactttgtttggtaataacgtttctaatcgaacgtgtgtccagtgtctgacactaaca |
49541469 |
T |
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| Q |
322 |
tgacactcatatatgtaattaaattcaactataannnnnnnnnncttcaaattattaataatatcagcgtatctgtg |
398 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49541468 |
tgacactcatatatgtaattaaattcaactataa--ttttttttcttcaaattattaataatatcagcgtatctgtg |
49541394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 49541813 - 49541708
Alignment:
| Q |
21 |
gcacaatgacagtaaaaatatggatagaactgcagatggggttcccaaaatat---catcctgtgttagcagtgagggtgatgatttaaaatcattccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49541813 |
gcacaatgacagtaaaaatatggatagaactgcagatggagttcccaaaatattctcatcctgtgttagcagtgagggtgatgatttaaaatcattccaa |
49541714 |
T |
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| Q |
118 |
tctatg |
123 |
Q |
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|||||| |
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| T |
49541713 |
tctatg |
49541708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 40917268 - 40917167
Alignment:
| Q |
24 |
caatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcagtgagggtgatgatttaaaatcattccaatct |
120 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40917268 |
caatgacggtaaaaatatggatagaagtgcagatggggttcccaaaatatcctcatcgtgtgttagcagcgagggtgatgatttaaaatcattccaatct |
40917169 |
T |
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| Q |
121 |
at |
122 |
Q |
| |
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|| |
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| T |
40917168 |
at |
40917167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 3150493 - 3150392
Alignment:
| Q |
24 |
caatgacagtaaaaatatggatagaactgcagatggggttcccaaaatatc---atcctgtgttagcagtgagggtgatgatttaaaatcattccaatct |
120 |
Q |
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||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3150493 |
caatgacggtaaaaatatggatagaagtgcagacggggttcccaaaatatcctcatcgtgtgttaacagtgagggtgatgatttaaaatcattccaatct |
3150394 |
T |
|
| Q |
121 |
at |
122 |
Q |
| |
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|| |
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|
| T |
3150393 |
at |
3150392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 2884073 - 2884174
Alignment:
| Q |
24 |
caatgacagtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcagtgagggtgatgatttaaaatcattccaatct |
120 |
Q |
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||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
2884073 |
caatgacggtaaaaatatggatagaagtgcagacggggttcccaaaatatcctcatcgtgtgttaacagcgagggtgatgatttaaaatcattccaatct |
2884172 |
T |
|
| Q |
121 |
at |
122 |
Q |
| |
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|| |
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|
| T |
2884173 |
at |
2884174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 29251582 - 29251671
Alignment:
| Q |
32 |
gtaaaaatatggatagaactgcagatggggttcccaaaata---tcatcctgtgttagcagtgagggtgatgatttaaaatcattccaat |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||| | |||||||||||| |||||||||| |||| |
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| T |
29251582 |
gtaaaaatatggatagaagtgcagatggggttcccagaatatcctcatcgtgtgttagctgcgagggtgatgatctaaaatcatttcaat |
29251671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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