View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2775_low_4 (Length: 393)

Name: NF2775_low_4
Description: NF2775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2775_low_4
NF2775_low_4
[»] chr5 (3 HSPs)
chr5 (18-382)||(9712221-9712585)
chr5 (60-127)||(9724346-9724413)
chr5 (219-283)||(16127056-16127120)
[»] chr7 (2 HSPs)
chr7 (296-346)||(36909607-36909657)
chr7 (230-283)||(6824305-6824358)
[»] chr8 (2 HSPs)
chr8 (104-172)||(31106371-31106440)
chr8 (296-336)||(6020663-6020703)
[»] scaffold0316 (1 HSPs)
scaffold0316 (297-340)||(16023-16066)
[»] chr4 (2 HSPs)
chr4 (233-283)||(4161642-4161692)
chr4 (246-283)||(971878-971915)
[»] chr6 (1 HSPs)
chr6 (296-365)||(2782983-2783052)
[»] chr2 (2 HSPs)
chr2 (321-362)||(37561553-37561594)
chr2 (219-283)||(17220847-17220911)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 9712221 - 9712585
Alignment:
Q  18 aaaaaggccaaaatatgtatcccatctcaccaatagaagcagagaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712221 aaaaaggccaaaatatgtatcccatctcaccaatagaagcagagaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaac 9712320  T
Q  118 tgaaatattaccagtagaaactccaatatacctgccaagcagatacatgttcataacctttgatgctccttaaaaatgtaatttctcaatggagtaaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712321 tgaaatattaccagtagaaactccaatatacctgccaagcagatacatgttcataacctttgatgctccttaaaaatgtaatttctcaatggagtaaaca 9712420  T
Q  218 atcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaagtactcacggcgccatgattttgttgaagctcta 317  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712421 atcattttggaccttacatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaagtactcacggcgccatgattttgttgaagctcta 9712520  T
Q  318 gaatgtagcttttgccaaaatcatggtggcttgccgtgattccgctaaacttaccgccaattcat 382  Q
     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9712521 aaatgtagcttttgccaaaaccatggtggcttgccgtgattccgctaaacttaccgccaattcat 9712585  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 9724346 - 9724413
Alignment:
Q  60 agaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatatta 127  Q
    |||||||||| |||||| ||| |  |||||| ||||||||||||||||||||||||||||||||||||    
T  9724346 agaggggtatggtgtaattcaactttaccacgtgcaaattttgatcaagcttcaaaactgaaatatta 9724413  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 16127056 - 16127120
Alignment:
Q  219 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 283  Q
    ||||||||| || ||||||||| | | || ||||||||||||| | || ||||||||||||||||    
T  16127056 tcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaa 16127120  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 36909657 - 36909607
Alignment:
Q  296 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtgg 346  Q
    ||||||||||||| |||||||||| ||||||| ||| ||||||||||||||    
T  36909657 ccatgattttgttaaagctctagagtgtagctcttgtcaaaatcatggtgg 36909607  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 6824305 - 6824358
Alignment:
Q  230 cttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 283  Q
    ||||||||||||||||||| || | ||| |||||| ||||||||||||| ||||    
T  6824305 cttaaatgtgtgatgtgttttcgctataatctttgcatgtatcaaaattacaaa 6824358  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 31106440 - 31106371
Alignment:
Q  104 tcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgccaa-gcagatacatgttcata 172  Q
    ||||||||||||||||| ||||||||| |||||  ||||||||||||  |||  ||||||||||||||||    
T  31106440 tcaagcttcaaaactgatatattaccattagaatgtccaatatacctatcaacacagatacatgttcata 31106371  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 6020663 - 6020703
Alignment:
Q  296 ccatgattttgttgaagctctagaatgtagcttttgccaaa 336  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  6020663 ccatgattttgttgaagctctaaagtgtagtttttgccaaa 6020703  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 16023 - 16066
Alignment:
Q  297 catgattttgttgaagctctagaatgtagcttttgccaaaatca 340  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  16023 catgattttgttgaagttccaaaatgtagcttttgccaaaatca 16066  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 4161642 - 4161692
Alignment:
Q  233 aaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 283  Q
    |||||||| ||| || |||||||||||| || |||||||||||||||||||    
T  4161642 aaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaa 4161692  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 971878 - 971915
Alignment:
Q  246 gttgtcacaatagtctttgaatgtatcaaaatttcaaa 283  Q
    ||||||||||||||| || |||||||||||||||||||    
T  971878 gttgtcacaatagtcattcaatgtatcaaaatttcaaa 971915  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 2783052 - 2782983
Alignment:
Q  296 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtggcttgccgtgattccgctaa 365  Q
    |||||||||||||||||||| | | || ||||||   ||||||||| |||||| ||||||||||| ||||    
T  2783052 ccatgattttgttgaagctccaaagtgcagctttcaacaaaatcatagtggctcgccgtgattccactaa 2782983  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 37561594 - 37561553
Alignment:
Q  321 tgtagcttttgccaaaatcatggtggcttgccgtgattccgc 362  Q
    ||||||||||| ||||||||||||||||  ||||||||||||    
T  37561594 tgtagcttttggcaaaatcatggtggctcaccgtgattccgc 37561553  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 17220911 - 17220847
Alignment:
Q  219 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 283  Q
    ||||||||| |||||||||| ||| ||  |||||||||||||  | |||||||||||||| ||||    
T  17220911 tcattttggtccttaaatgtttgaagtcctgtcacaatagtcgctaaatgtatcaaaattacaaa 17220847  T

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