View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2775_low_9 (Length: 276)
Name: NF2775_low_9
Description: NF2775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2775_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 38278056 - 38278211
Alignment:
| Q |
1 |
tgacgtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacatatcgttacatt |
100 |
Q |
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| T |
38278056 |
tgacgtttgagacaaatttcatgtctgaaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacatatcattatatt |
38278155 |
T |
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| Q |
101 |
tataattgtctcagatgtcaattttaagtgtgaggcatgtgtaagggaaataaatt |
156 |
Q |
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| T |
38278156 |
tataattgtctcatatgtcaattttaagtgtgaggcatgtgtaagggaaataaatt |
38278211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 38278243 - 38278320
Alignment:
| Q |
154 |
attttggtatgtgtatacatagtttcatttta--gtcctctatattggattagaatttctttttccgacctattaact |
229 |
Q |
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| T |
38278243 |
attttggtctgcgtatacatagtttcattttatagacctctatattggatgagaatttctttttccgacctattaact |
38278320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 38270571 - 38270688
Alignment:
| Q |
5 |
gtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacatatcgttacatttata |
104 |
Q |
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| T |
38270571 |
gtttgagacaaatttcatgacagaaagtgactac--tatatcatgttggatttagtaaagtcccacttcgaacacaatacaacaaaacatcatgtttata |
38270668 |
T |
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| Q |
105 |
attgtctcagatgtcaattt |
124 |
Q |
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| T |
38270669 |
tttgtctcaaatgtcaattt |
38270688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 38271846 - 38271959
Alignment:
| Q |
5 |
gtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacatatcgttacatttata |
104 |
Q |
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|||||||||||||||||||||| ||||| ||| ||||| ||||||| |||||| ||||||| |||||| | ||||||| |||| | | ||| |||||| |
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| T |
38271846 |
gtttgagacaaatttcatgacagaaagtgactcctata--tcatgttggatttagtaaagtcccacatccaacacaatagaacaaaacattatgtttata |
38271943 |
T |
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| Q |
105 |
attgtctcagatgtca |
120 |
Q |
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| T |
38271944 |
tttgtctcaaatgtca |
38271959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 38279492 - 38279575
Alignment:
| Q |
5 |
gtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaaca |
88 |
Q |
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| T |
38279492 |
gtttgagacaaatttcatgacagaaagtaattactgcatatcatgttggttttatttaaggcccacatcggacacaatacaaca |
38279575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 38278231 - 38278272
Alignment:
| Q |
226 |
aactgtctcttcattttggtccgtgtatacatagtttcattt |
267 |
Q |
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| T |
38278231 |
aactgtgtcttcattttggtctgcgtatacatagtttcattt |
38278272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 38273529 - 38273610
Alignment:
| Q |
5 |
gtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaaca |
88 |
Q |
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| T |
38273529 |
gtttgaggcaaatttcatgacagaacgtgactac--tatatcatgttcgatttaggaaagttctacatcgaacaccatacaaca |
38273610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 26572766 - 26572849
Alignment:
| Q |
6 |
tttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacata |
90 |
Q |
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|||||||||||||| |||||| ||||||||||||| | |||||||| | ||||||||||| |||||| | ||||||||||||| |
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| T |
26572766 |
tttgagacaaattttatgacagaaagtaactacta-acatcatgttaggtttattaaagttccacatcaaaaacaatacaacata |
26572849 |
T |
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