View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2776_high_2 (Length: 408)

Name: NF2776_high_2
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2776_high_2
NF2776_high_2
[»] chr3 (22 HSPs)
chr3 (2-216)||(10359902-10360116)
chr3 (2-216)||(9981141-9981355)
chr3 (41-171)||(10130686-10130816)
chr3 (41-171)||(10372199-10372329)
chr3 (290-397)||(9980965-9981072)
chr3 (290-386)||(10360185-10360281)
chr3 (123-285)||(10264591-10264751)
chr3 (339-386)||(10264483-10264530)
chr3 (206-269)||(10430097-10430160)
chr3 (190-247)||(11772695-11772752)
chr3 (362-397)||(10584471-10584506)
chr3 (189-223)||(10134711-10134745)
chr3 (349-397)||(10035589-10035637)
chr3 (198-237)||(10093176-10093215)
chr3 (198-237)||(10200058-10200097)
chr3 (188-245)||(10130614-10130671)
chr3 (190-223)||(10130846-10130879)
chr3 (190-223)||(10372136-10372169)
chr3 (188-245)||(10372344-10372401)
chr3 (187-216)||(10584614-10584643)
chr3 (2-42)||(10035698-10035738)
chr3 (349-397)||(10130514-10130562)
[»] scaffold0083 (2 HSPs)
scaffold0083 (2-216)||(53782-53996)
scaffold0083 (290-397)||(54065-54172)
[»] chr8 (1 HSPs)
chr8 (64-97)||(11488900-11488933)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 10359902 - 10360116
Alignment:
Q  2 aaaatggatcgtaaggtctcaatcaggatcaactagatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaac 101  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359902 aaaatggatcttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaac 10360001  T
Q  102 caatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaaga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||    
T  10360002 caatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaaga 10360101  T
Q  202 atattacaaacccta 216  Q
    |||||||||||||||    
T  10360102 atattacaaacccta 10360116  T

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Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 9981355 - 9981141
Alignment:
Q  2 aaaatggatcgtaaggtctcaatcaggatcaactagatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaac 101  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981355 aaaatggatcttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaac 9981256  T
Q  102 caatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaaga 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||          |||||||||||||||    
T  9981255 caatattaattcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaaga 9981156  T
Q  202 atattacaaacccta 216  Q
    |||||||||||||||    
T  9981155 atattacaaacccta 9981141  T

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Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 10130816 - 10130686
Alignment:
Q  41 attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag 140  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10130816 atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag 10130717  T
Q  141 cattcatttaaaattacaaattaagaatcac 171  Q
    |||||| ||||| ||||||||||||||||||    
T  10130716 cattcacttaaagttacaaattaagaatcac 10130686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 10372199 - 10372329
Alignment:
Q  41 attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag 140  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10372199 atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag 10372298  T
Q  141 cattcatttaaaattacaaattaagaatcac 171  Q
    |||||| ||||| ||||||||||||||||||    
T  10372299 cattcacttaaagttacaaattaagaatcac 10372329  T

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Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 9981072 - 9980965
Alignment:
Q  290 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 389  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981072 gcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 9980973  T
Q  390 ggcctttg 397  Q
    ||||||||    
T  9980972 ggcctttg 9980965  T

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Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 10360185 - 10360281
Alignment:
Q  290 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag 386  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360185 gcaatcaatggaagctgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag 10360281  T

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Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 10264751 - 10264591
Alignment:
Q  123 atggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaagaatattacaaaccctactgcat 222  Q
    |||||||||||||| ||||||||  ||||| |||||||||||||||||||||             |||||||||||||||||||||||| |||||| |||    
T  10264751 atggttttatcatatgagcattcgcttaaagttacaaattaagaatcacgtc--cgaaaaaaaaagttacaaattaagaatattacaaatcctactacat 10264654  T
Q  223 tgtactttgtctgaccggatcatgcgggatattaggaaacattcaaatgataataaaatacaa 285  Q
    |||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||    
T  10264653 tgtactttgtctgatcggatcatgcaggttattacgaaacattcaaatgataataaaatacaa 10264591  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 10264530 - 10264483
Alignment:
Q  339 aagcagttttcttcaattcatcaagtgagcagattatcatccacatag 386  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  10264530 aagcatttttcttcaattcatcaagtgagctgattatcatccacatag 10264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 10430097 - 10430160
Alignment:
Q  206 tacaaaccctactgcattgtactttgtctgaccggatcatgcgggatattaggaaacattcaaa 269  Q
    ||||||||||||||||||||| | |||||||||||||||||| || ||||| ||||||| ||||    
T  10430097 tacaaaccctactgcattgtaatctgtctgaccggatcatgcaggttattatgaaacatacaaa 10430160  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 11772752 - 11772695
Alignment:
Q  190 tacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcatgc 247  Q
    |||||||||||||||||||||| |||| |||||| |||||||||| || |||||||||    
T  11772752 tacaaattaagaatattacaaatcctaatgcattctactttgtctaacgggatcatgc 11772695  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 10584506 - 10584471
Alignment:
Q  362 agtgagcagattatcatccacatagctaggcctttg 397  Q
    ||||||||||||||||||||||||||||||||||||    
T  10584506 agtgagcagattatcatccacatagctaggcctttg 10584471  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 10134745 - 10134711
Alignment:
Q  189 ttacaaattaagaatattacaaaccctactgcatt 223  Q
    |||||||||||||||||||||||||||||||||||    
T  10134745 ttacaaattaagaatattacaaaccctactgcatt 10134711  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 10035637 - 10035589
Alignment:
Q  349 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 397  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  10035637 cttcaattcacgaaatgagctgattatcatccacatagctaggcctttg 10035589  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 10093215 - 10093176
Alignment:
Q  198 aagaatattacaaaccctactgcattgtactttgtctgac 237  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10093215 aagaatattacaaaccctactgcattgtactctgtatgac 10093176  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 10200097 - 10200058
Alignment:
Q  198 aagaatattacaaaccctactgcattgtactttgtctgac 237  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10200097 aagaatattacaaaccctactgcattgtactctgtatgac 10200058  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 10130671 - 10130614
Alignment:
Q  188 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 245  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10130671 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10130614  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 10130879 - 10130846
Alignment:
Q  190 tacaaattaagaatattacaaaccctactgcatt 223  Q
    |||||||||||||||||||||||||||| |||||    
T  10130879 tacaaattaagaatattacaaaccctaccgcatt 10130846  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 10372136 - 10372169
Alignment:
Q  190 tacaaattaagaatattacaaaccctactgcatt 223  Q
    |||||||||||||||||||||||||||| |||||    
T  10372136 tacaaattaagaatattacaaaccctaccgcatt 10372169  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 10372344 - 10372401
Alignment:
Q  188 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 245  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10372344 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10372401  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 10584643 - 10584614
Alignment:
Q  187 tgttacaaattaagaatattacaaacccta 216  Q
    ||||||||||||||||||||||||||||||    
T  10584643 tgttacaaattaagaatattacaaacccta 10584614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 10035738 - 10035698
Alignment:
Q  2 aaaatggatcgtaaggtctcaatcaggatcaactagatgat 42  Q
    |||||||||| ||||||||||| |||||||||||| |||||    
T  10035738 aaaatggatcttaaggtctcaaccaggatcaactatatgat 10035698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 10130562 - 10130514
Alignment:
Q  349 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 397  Q
    |||||||||| ||| |||||  |||||||||||||||||| ||||||||    
T  10130562 cttcaattcaccaaatgagctaattatcatccacatagctgggcctttg 10130514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 53782 - 53996
Alignment:
Q  2 aaaatggatcgtaaggtctcaatcaggatcaactagatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaac 101  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53782 aaaatggatcttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaac 53881  T
Q  102 caatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaaga 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||          |||||||||||||||    
T  53882 caatattaattcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaaga 53981  T
Q  202 atattacaaacccta 216  Q
    |||||||||||||||    
T  53982 atattacaaacccta 53996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 54065 - 54172
Alignment:
Q  290 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 389  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54065 gcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 54164  T
Q  390 ggcctttg 397  Q
    ||||||||    
T  54165 ggcctttg 54172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 11488933 - 11488900
Alignment:
Q  64 attcaacaaatgtatataggaatatgaatattta 97  Q
    |||||||||||||||||||||||| |||||||||    
T  11488933 attcaacaaatgtatataggaataagaatattta 11488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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