View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_1 (Length: 488)
Name: NF2776_low_1
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 2299379 - 2299044
Alignment:
| Q |
16 |
caagaagtataccagtactatgagcaactgtaggtaatcgccactgcataaattgtcaccgcgagctactgccaaagtgagccaatgtagaaaatcacca |
115 |
Q |
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| T |
2299379 |
caagaagtataccattactatgagcaactgtaggtaatcgccactgcataaattgtcaccgcgagctactgccaaagtgagccaatggagaaaattacca |
2299280 |
T |
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| Q |
116 |
atgcgtaagttatcacggcgaacaatatgaattttagcttttataataagggatagtaacagcattaaccaaaaggtctatggtacgtcttcacaacctt |
215 |
Q |
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| T |
2299279 |
atacgtaagttatcacgacgaacaatatgaattttagcttttataataagggatagtagcaacattaaccgaaaggtctatggtacgtcttcacaacctt |
2299180 |
T |
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| Q |
216 |
agaagactcctataattaaagattgctagacccattacaacaaaacttctgacatgtaaatggattaaaaactgacaatatagtgtggcaaatgtgacct |
315 |
Q |
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| T |
2299179 |
ggaagactcctatagttaaagattgctagacccattacaacaaaacttctgacatgtaaatggatggaaaactgacaatatagtgtggcaaatgtgacct |
2299080 |
T |
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| Q |
316 |
gcaaacaggaacgaaaaaccttagtatgggcaaact |
351 |
Q |
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| T |
2299079 |
gcaaacatgaacgaaaaaccttagtatgggcgaact |
2299044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 346 - 473
Target Start/End: Complemental strand, 2298998 - 2298870
Alignment:
| Q |
346 |
caaactcctacgattaaactcattcatcatatgaaccacacaaagtagtgtttaaaatgagatagtgagaagttgagtaactcatttatcatg-tataaa |
444 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2298998 |
caaactcctacaattaaactcattcatcatatgaaccacacaaagtagtgttataaatgagatagtgagaagttgagtaactcatttatcatgttataaa |
2298899 |
T |
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| Q |
445 |
gaactaataccattagccattgatcgaag |
473 |
Q |
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| T |
2298898 |
gaactaataccatttgccattgatcgaag |
2298870 |
T |
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