View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_10 (Length: 268)
Name: NF2776_low_10
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_10 |
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| [»] scaffold0729 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 7891114 - 7890862
Alignment:
| Q |
5 |
tgtcatgtgataggagatgaacaattgttatacaatgctaaacatccggtgggagtagaagctcgggtgaaagatgtgattcaactattaaacagcgaac |
104 |
Q |
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| T |
7891114 |
tgtcatttgatagaagaccaaaaatcgttattcattgctgaacatccggtgggagtagaagctcgggtgaaagatgtgattcaactattgaacagcgaac |
7891015 |
T |
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| Q |
105 |
aagcagaaaataccatgattgtagggatatgggggatgactggggttggtaaaacaataattgctaaagccacttataatcaaatgagtttcacttttga |
204 |
Q |
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| T |
7891014 |
aagcagaaaataccatgattgtagggatatgggggatggctggggttggtaaaacaataattgctaaagccacttataatcaaatgagtttcacttttga |
7890915 |
T |
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| Q |
205 |
ttgcaagagctttctctataatgtcaatgaaacttgcaaatcgggtgatgatg |
257 |
Q |
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| T |
7890914 |
ttgcaagagcattctcaagaatgtcaatgaaacttgcaaatcgggtgatgatg |
7890862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 7876307 - 7876143
Alignment:
| Q |
40 |
tgctaaacatccggtgggagtagaagctcgggtgaaagatgtgattcaactattaaacagcgaacaagcagaaaataccatgattgtagggatatggggg |
139 |
Q |
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| T |
7876307 |
tgctaaacacccagtgggagtagaagctcggatgcaagatgttattcaactattgaacgcggaacaaccagaaaataccataatcataggggtatggggg |
7876208 |
T |
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| Q |
140 |
atgactggggttggtaaaacaataattgctaaagccacttataatcaaatgagtttcacttttga |
204 |
Q |
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| T |
7876207 |
acaaatggggttggtaaaacaacaatcgccaaagccacttgaaatcaaatgagttacaattttga |
7876143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 6792114 - 6792177
Alignment:
| Q |
126 |
tagggatatgggggatgactggggttggtaaaacaataattgctaaagccacttataatcaaat |
189 |
Q |
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| T |
6792114 |
tagggatatgggggatgacagggattggtaaatcaaccattgccaaagccatttatgatcaaat |
6792177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 6748600 - 6748661
Alignment:
| Q |
128 |
gggatatgggggatgactggggttggtaaaacaataattgctaaagccacttataatcaaat |
189 |
Q |
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| T |
6748600 |
gggatatgggggatggcaggggttggtaaatcagctattgctaaagccatttatgatcaaat |
6748661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 6515 - 6452
Alignment:
| Q |
126 |
tagggatatgggggatgactggggttggtaaaacaataattgctaaagccacttataatcaaat |
189 |
Q |
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| T |
6515 |
tagggatatgggggatgacagggattggtaaatcaaccattgccaaagccatttatgatcaaat |
6452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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