View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_14 (Length: 256)
Name: NF2776_low_14
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 27991470 - 27991246
Alignment:
| Q |
18 |
gaagcactaatggcataattaaataagagaaggt---tgatagatatgctcatggatgaatttaattccattaattaggatacatgctacggaattatgt |
114 |
Q |
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| T |
27991470 |
gaagcactactggcataattaaataagagaatgtagttgatagatatgctctataatgaatttaattccattaattaggatacatgctatggaattatgt |
27991371 |
T |
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| Q |
115 |
ttcacaagtgttatgtttctaatcattaattatgatacaaatcagaaaacagctccagcaaataacgaactcttctccaactgtttctacaattgccttc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27991370 |
ttcacaagtgttatgtttctaatcattaattatgatacaaatcagaaaacagctccagcaaataacgaactcttctccaactgtttctacagttgccttc |
27991271 |
T |
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| Q |
215 |
tttcaaaggtataattaatcaactg |
239 |
Q |
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| T |
27991270 |
ttccaaaggtataattaatcaactg |
27991246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 28001530 - 28001384
Alignment:
| Q |
33 |
taattaaataagagaaggttgatagatatgctcatggatgaatttaattccattaattaggatacatgctacggaattatgtttcacaagtgttatgttt |
132 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
28001530 |
taattaaataattgaaggttgatagatatgctcttggatgaatttaattccattaattaggatacatgctatggaattatgtttcacaagtgttttgttt |
28001431 |
T |
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| Q |
133 |
ctaatcattaattatgatacaaatcagaaaacagctccagcaaataa |
179 |
Q |
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| T |
28001430 |
ctaatcattaattatgatacaattcagaaaacaacctcagcaaataa |
28001384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 28001344 - 28001312
Alignment:
| Q |
193 |
aactgtttctacaattgccttctttcaaaggta |
225 |
Q |
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| T |
28001344 |
aactgtttctacaattgccttctttcaaaggta |
28001312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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