View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2776_low_17 (Length: 250)

Name: NF2776_low_17
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2776_low_17
NF2776_low_17
[»] scaffold0051 (5 HSPs)
scaffold0051 (19-236)||(895-1112)
scaffold0051 (19-236)||(3772-3989)
scaffold0051 (19-236)||(6960-7177)
scaffold0051 (19-236)||(8561-8778)
scaffold0051 (19-236)||(7943-8160)


Alignment Details
Target: scaffold0051 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 895 - 1112
Alignment:
Q  19 caaagcctaaggaatcttctaaatgaatgaaagatcaaattgacatcaaaatatcgttccaagagtcgctcttgaacatggtctctttttgaatcatctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  895 caaagcctaaggaatcttctaaatgaatgaaagatcaaattgagatcaaaatctcgttccaagagtcgctcttgaacatggtctctttttgaatcatctt 994  T
Q  119 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  995 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 1094  T
Q  219 aatttccatgtacctttg 236  Q
    ||||||||||||||||||    
T  1095 aatttccatgtacctttg 1112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 3772 - 3989
Alignment:
Q  19 caaagcctaaggaatcttctaaatgaatgaaagatcaaattgacatcaaaatatcgttccaagagtcgctcttgaacatggtctctttttgaatcatctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3772 caaagcctaaggaatcttctaaatgaatgaaagatcaaattgagatcaaaatctcgttccaagagtcgctcttgaacatggtctctttttgaatcatctt 3871  T
Q  119 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3872 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 3971  T
Q  219 aatttccatgtacctttg 236  Q
    ||||||||||||||||||    
T  3972 aatttccatgtacctttg 3989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 6960 - 7177
Alignment:
Q  19 caaagcctaaggaatcttctaaatgaatgaaagatcaaattgacatcaaaatatcgttccaagagtcgctcttgaacatggtctctttttgaatcatctt 118  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||    
T  6960 caaagcctaatgaatcttctaaatgaatgaaatatcaaattgacatcaaaatcttgttccaagagttgctcttgaacatggtctctttttgaatcatttt 7059  T
Q  119 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7060 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 7159  T
Q  219 aatttccatgtacctttg 236  Q
    ||||||||||||||||||    
T  7160 aatttccatgtacctttg 7177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 8561 - 8778
Alignment:
Q  19 caaagcctaaggaatcttctaaatgaatgaaagatcaaattgacatcaaaatatcgttccaagagtcgctcttgaacatggtctctttttgaatcatctt 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||    
T  8561 caaagcctaaggaatcttctaaatgaatgaaatatcaaattgacatcaaaatcttgttccaagagttgctcttgaacatggtctctttttgaatcatttt 8660  T
Q  119 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8661 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 8760  T
Q  219 aatttccatgtacctttg 236  Q
    ||||| ||||||||||||    
T  8761 aatttacatgtacctttg 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 7943 - 8160
Alignment:
Q  19 caaagcctaaggaatcttctaaatgaatgaaagatcaaattgacatcaaaatatcgttccaagagtcgctcttgaacatggtctctttttgaatcatctt 118  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||    
T  7943 caaagcctaatgaatcttctaaatgaatgaaatatcaaattgacatcaaaatcttgttccaagagttgctcttgaacatggtctctttttgaatcatatt 8042  T
Q  119 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataattttttacaatatcattaatagctctagtagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  8043 tatgattcaagaccataaacttttgaggcaatagatcaagcaacaacatttaaatatatgagaataaatttttgcaatatcattcatagctctagtagga 8142  T
Q  219 aatttccatgtacctttg 236  Q
    ||||||||| ||||||||    
T  8143 aatttccatatacctttg 8160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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