View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_18 (Length: 246)
Name: NF2776_low_18
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 53618127 - 53617893
Alignment:
| Q |
1 |
atgtttactccaatacaaaaataatacttgcgttctaatgtaccttaaagggtcccacagtttaccactatttgtcttatgaacatgtcctagtatagaa |
100 |
Q |
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| T |
53618127 |
atgtttactccaatacaaaaataatatttgcgttctaatgtaccttaaagggtcccacagtttaccactatttgtcttatgaacatgtcctagtatagaa |
53618028 |
T |
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| Q |
101 |
---actctacttacatattattgacatgacactcaacatcaatgctagaaaaaatcagaaactgtttttagttgttcttaattttacaacattgcaatct |
197 |
Q |
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| T |
53618027 |
gaaactctacttacatattattgacatgacgctcaacatcaatgctagaaaaaatcagaaactgtttttagttgttcttaattttacaacattgcaatct |
53617928 |
T |
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| Q |
198 |
agatattagcttatataagaaatcaacatgtttct |
232 |
Q |
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| T |
53617927 |
agatattagcttatataagaaatcaacatgtttct |
53617893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 14344623 - 14344571
Alignment:
| Q |
98 |
gaaactctacttacatattattgacatgacactcaacatcaatgctagaaaaa |
150 |
Q |
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| T |
14344623 |
gaaactctacttacatattattgccatgccactcgacatcaatgctagaaaaa |
14344571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 50422340 - 50422409
Alignment:
| Q |
105 |
tacttacatattattgacatgacactcaacatcaatgctagaaaaaatcagaaactgtttttagttgttc |
174 |
Q |
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| T |
50422340 |
tacttacatattattgccatgctactcaactccaatgctagaacaaatcaaaaactacctttagttgttc |
50422409 |
T |
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