View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2776_low_2 (Length: 475)

Name: NF2776_low_2
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2776_low_2
NF2776_low_2
[»] chr5 (2 HSPs)
chr5 (19-465)||(9605768-9606214)
chr5 (23-125)||(9590460-9590564)
[»] chr8 (15 HSPs)
chr8 (19-267)||(6449802-6450050)
chr8 (19-269)||(6456269-6456519)
chr8 (396-454)||(6450311-6450369)
chr8 (128-241)||(6320552-6320665)
chr8 (128-241)||(6331014-6331127)
chr8 (128-213)||(6390101-6390186)
chr8 (128-241)||(7458203-7458316)
chr8 (128-210)||(6273673-6273755)
chr8 (128-241)||(7470605-7470718)
chr8 (399-447)||(6456576-6456624)
chr8 (119-186)||(6262455-6262522)
chr8 (128-211)||(6409353-6409436)
chr8 (128-210)||(6369119-6369201)
chr8 (128-241)||(6287924-6288037)
chr8 (128-228)||(6423379-6423479)
[»] chr2 (4 HSPs)
chr2 (98-231)||(42689355-42689488)
chr2 (397-454)||(42689216-42689273)
chr2 (107-186)||(42692369-42692448)
chr2 (19-61)||(42689525-42689567)
[»] chr3 (2 HSPs)
chr3 (115-183)||(36745679-36745747)
chr3 (402-454)||(36745571-36745623)
[»] chr1 (1 HSPs)
chr1 (119-189)||(36926123-36926193)


Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 9606214 - 9605768
Alignment:
Q  19 tttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttggataatacaaggaaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9606214 tttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcatttggataatacaaggaaaca 9606115  T
Q  119 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606114 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatg 9606015  T
Q  219 gatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataagagttaaaattttgttatcaatttagcgaccaattttttaaattggccg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606014 gatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataacagttaaaattttgttatcaatttagcgaccaattttttaaattggccg 9605915  T
Q  319 ctagattggtggagaacaacgtatttccaacactagcatagcataattgcaatatgcatccaatttagatggtggcgaattacctcttgataagatcagc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9605914 ctagattggtggagaacaacgtatttccaacactagcatagcataattgcaatatgcatccaatttagatggtggcgaattacctcttgataagatcagc 9605815  T
Q  419 cggtaatgcttgatcagtgaaaacccaattcttgtatgctgatgatg 465  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  9605814 cggtaatgcttgatcagtgaaaacccaattcttgtatgctgctgatg 9605768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 9590564 - 9590460
Alignment:
Q  23 aagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttt--tgtactgcctcatcagttggataatacaaggaaacata 120  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||  | |  ||||||||||||||| ||||||||||| ||||     
T  9590564 aagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtcttttattcttttgcctcatcagttgggtaatacaaggagacatg 9590465  T
Q  121 gtctt 125  Q
    |||||    
T  9590464 gtctt 9590460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 6449802 - 6450050
Alignment:
Q  19 tttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttggataatacaaggaaaca 118  Q
    |||||||||||| ||||| ||||||||| |||||||||||||  |||| | ||||||||||||||| || |||||||| |||||||| || ||||| |||    
T  6449802 tttcaagtcaccgtgacccttttctacagcttccttccaccatttttgaatttcagtgtctttttgcaccgcctcatctgttggatagtataaggagaca 6449901  T
Q  119 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatg 218  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||| || || || || |    
T  6449902 tagtcttggacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagtcgaaggccgtgaggggaagagg 6450001  T
Q  219 gatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaat 267  Q
    |||||||||| |||||||||||  ||||| |||||||| | ||||||||    
T  6450002 gatcctcaacagctaatcctctgaatcaaacaaacaatatgttatcaat 6450050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 6456269 - 6456519
Alignment:
Q  19 tttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttggataatacaaggaaaca 118  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||| ||| | ||||| ||||||||||| ||||| |||    
T  6456269 tttcaagtcaccatgacccttttctacagcttccttccaccaagtttgtagttcagtgtccttttgcactacttcatctgttggataatataaggagaca 6456368  T
Q  119 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatg 218  Q
    |||||||| ||||||| |||||||||||||||||| || ||||||||||| |||||||||||||| || | | |||||||||| ||||| || || || |    
T  6456369 tagtcttgaacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaagacg 6456468  T
Q  219 gatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataa 269  Q
    | |||||||| |||| ||||||  |||||||| ||||||| ||||||||||    
T  6456469 ggtcctcaacagctagtcctctgaatcaagcagacaatttgttatcaataa 6456519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 6450311 - 6450369
Alignment:
Q  396 aattacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta 454  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6450311 aattacctcttgataagatcagctggtaatgcttgatcagtgaaaacccaattcttgta 6450369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 6320552 - 6320665
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 227  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  |||||||| || | |||||||||||    
T  6320552 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6320651  T
Q  228 cggctaatcctcta 241  Q
    | || | |||||||    
T  6320652 cagccactcctcta 6320665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 6331014 - 6331127
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 227  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  |||||||| || | |||||||||||    
T  6331014 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6331113  T
Q  228 cggctaatcctcta 241  Q
    | || | |||||||    
T  6331114 cagccactcctcta 6331127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 6390101 - 6390186
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggaga 213  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||| || || ||||| |||| |||||| || |||||||||||    
T  6390101 acccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagaccatgtggaga 6390186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 7458203 - 7458316
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 227  Q
    |||||||||||||||||| |||||||||| |||||||||   |||||||| |||||||| |||| ||| ||||  ||||||||||| | |||||||| ||    
T  7458203 acccatgacttaatagcagcccatatctctagtccatcagaagcataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7458302  T
Q  228 cggctaatcctcta 241  Q
    | || | |||||||    
T  7458303 ctgccactcctcta 7458316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 6273673 - 6273755
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgg 210  Q
    ||||||||||||||| || |||||||||| | ||||||| | ||||||||||||||||| |||| ||| |||||||| |||||    
T  6273673 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtgg 6273755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 7470605 - 7470718
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 227  Q
    |||||||||||||||||| |||||||||| |||||||||    ||||||| |||||||| |||| ||| ||||  ||||||||||| | |||||||| ||    
T  7470605 acccatgacttaatagcagcccatatctctagtccatcagaaacataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7470704  T
Q  228 cggctaatcctcta 241  Q
    | || | |||||||    
T  7470705 ctgccactcctcta 7470718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 6456576 - 6456624
Alignment:
Q  399 tacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaat 447  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||    
T  6456576 tacctcttgataagatcagccggtaatgcttggtcggtgaaaacccaat 6456624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 6262455 - 6262522
Alignment:
Q  119 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctc 186  Q
    |||||||| ||||||| ||||||||||||||| || || ||||||||||| ||||||||||| |||||    
T  6262455 tagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc 6262522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 6409353 - 6409436
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgga 211  Q
    |||||||||||||||||| |||||||||| | |||||||   |||||||| || ||||| |||| ||| ||||  |||||||||    
T  6409353 acccatgacttaatagcagcccatatctctaatccatcagtagcataaggataatcctctatcaaaaggcgaacaccatgtgga 6409436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 6369119 - 6369201
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgg 210  Q
    |||||||||||||||||| |||||||||| ||||||||    ||||| || || ||||| |||| |||||| || ||||||||    
T  6369119 acccatgacttaatagcagcccatatctctagtccatctgaagcatatggataatcctctatcagaagacgcagaccatgtgg 6369201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 6287924 - 6288037
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 227  Q
    |||||||||||||| ||   ||||||||| | ||||||| | ||||||||||| || |  |||| ||| |||||||| ||||| || | |||||||||||    
T  6287924 acccatgacttaattgctgtccatatctctaatccatcagcagcataagggtaatcttttatcagaaggcgaaggccgtgtggggaagttggatcctcaa 6288023  T
Q  228 cggctaatcctcta 241  Q
    | || | |||||||    
T  6288024 cagccactcctcta 6288037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 6423379 - 6423479
Alignment:
Q  128 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 227  Q
    ||||||| ||| |||||| |||||||||| ||||||||    |||||||| || ||||| |||| ||| |||| ||| ||||| || | |||||||||||    
T  6423379 acccatgtcttgatagcagcccatatctctagtccatccgaagcataaggataatcctcaatcaaaaggcgaatgccgtgtggtgaagctggatcctcaa 6423478  T
Q  228 c 228  Q
    |    
T  6423479 c 6423479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 42689488 - 42689355
Alignment:
Q  98 gttggataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagac 197  Q
    |||| ||||||||  || ||||| ||||| |||||||  |||||||    ||||||||| | ||||||||| ||||||||||||||||| |||| |||||    
T  42689488 gttgcataatacactgagacataatcttgtacccatgttttaatagttgtccatatctctaatccatcaacagcataagggtagtcctctatcagaagac 42689389  T
Q  198 gaaggccatgtggagacgatggatcctcaacggc 231  Q
    |||| || | ||| ||||||||||||||||||||    
T  42689388 gaagtccgtatggggacgatggatcctcaacggc 42689355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 42689273 - 42689216
Alignment:
Q  397 attacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta 454  Q
    |||||||||||||||||||||| || |  |||||||||| ||||||||||||||||||    
T  42689273 attacctcttgataagatcagctggaagggcttgatcagggaaaacccaattcttgta 42689216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 42692369 - 42692448
Alignment:
Q  107 tacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctc 186  Q
    |||||||| ||||||||||| ||||||| ||| || ||| |||||||||| | |||||||   ||||||||||| |||||    
T  42692369 tacaaggagacatagtcttgaacccatgtctttattgcagcccatatctctaatccatcatgagcataagggtaatcctc 42692448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 42689567 - 42689525
Alignment:
Q  19 tttcaagtcaccatgacctttttctacaacttccttccaccaa 61  Q
    |||||| |||||||||||||| ||||||||||| |||||||||    
T  42689567 tttcaaatcaccatgacctttctctacaacttctttccaccaa 42689525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 36745747 - 36745679
Alignment:
Q  115 aacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtc 183  Q
    |||||||||||  ||||||| ||||||||||||||||||||| | ||||||||| ||| ||||||||||    
T  36745747 aacatagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggtagtc 36745679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 36745623 - 36745571
Alignment:
Q  402 ctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta 454  Q
    ||||||||||||||||| |||| |||||| ||||  |||||||||| ||||||    
T  36745623 ctcttgataagatcagcaggtagtgcttggtcaggaaaaacccaatccttgta 36745571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 36926193 - 36926123
Alignment:
Q  119 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat 189  Q
    |||||||  ||||||| ||| || |||  ||| ||||| ||||||||||||||||||||||| ||||||||    
T  36926193 tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat 36926123  T

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