View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_22 (Length: 236)
Name: NF2776_low_22
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10359741 - 10359521
Alignment:
| Q |
1 |
tcttctgagatagttacctttgtcgtaaacaatgcctccaaaattcttacaacctctgcttctcctcttggtaatggtaagtgtgtaatccttttcttca |
100 |
Q |
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| T |
10359741 |
tcttctgagatagttacctttgtcgtaaacaatgcctccgaaattcttacaacctctgcttcccctcttggtaatggtaagtgtgtaatccttttcttca |
10359642 |
T |
|
| Q |
101 |
ttagcttaatctactgtattatattattgtgaacatttttattaatagctcagaatttgtatgaaagatgagaaatatctccgactaaatcgcgcttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10359641 |
ttagcttaatctactgtattatattattgtgaacatttttattagtagctcagaatttgtatgaaagatgagaaatatctccgactaaatcgcgcttaaa |
10359542 |
T |
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| Q |
201 |
gcatacaatctaggtggcctt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
10359541 |
gcatacaatctaggtggcctt |
10359521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9994801 - 9995025
Alignment:
| Q |
1 |
tcttctgagatagttacctttgtcgtaaacaatgcctccaaaattcttacaacctctgcttctcctcttggtaatggtaagtgtgtaatccttttcttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
9994801 |
tcttctgagatagttacctttgtcgtaaacaatgcctccaaaattcttacaacctctgcatcccctcttggtaatggtaagtgtgtaatccttttcttca |
9994900 |
T |
|
| Q |
101 |
ttagcttaatctactgtat----tatattattgtgaacatttttattaatagctcagaatttgtatgaaagatgagaaatatctccgactaaatcgcgct |
196 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994901 |
ttagcttaacctactgtattgtatatattattgtgaacatttttattaatagctcagaatttgtatgaaagatgagaaatatctccgactaaatcgcgct |
9995000 |
T |
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| Q |
197 |
taaagcatacaatctaggtggcctt |
221 |
Q |
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||||||||||||||||||||||||| |
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| T |
9995001 |
taaagcatacaatctaggtggcctt |
9995025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 17848646 - 17848570
Alignment:
| Q |
90 |
ccttttcttcattagcttaatctactgtattatattattgtgaacatttttattaatagctcagaatttgtatgaaa |
166 |
Q |
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||||| ||||||||||||||| ||| |||||||||| |||| |||||||| | ||| ||||||||||||||||||| |
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| T |
17848646 |
cctttgcttcattagcttaatttacagtattatattgttgtaaacattttgaccaatggctcagaatttgtatgaaa |
17848570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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