View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2776_low_23 (Length: 232)

Name: NF2776_low_23
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2776_low_23
NF2776_low_23
[»] chr3 (4 HSPs)
chr3 (16-213)||(11024866-11025066)
chr3 (16-213)||(11015854-11016054)
chr3 (16-214)||(11006291-11006492)
chr3 (51-187)||(47452271-47452407)
[»] chr4 (32 HSPs)
chr4 (33-187)||(7770982-7771136)
chr4 (17-183)||(48862823-48862992)
chr4 (33-187)||(7789667-7789821)
chr4 (52-187)||(7904610-7904745)
chr4 (16-188)||(33134152-33134327)
chr4 (57-185)||(48170956-48171087)
chr4 (51-160)||(48891014-48891123)
chr4 (24-187)||(7822547-7822710)
chr4 (37-184)||(7813061-7813208)
chr4 (11-186)||(7877299-7877474)
chr4 (85-183)||(48735713-48735811)
chr4 (58-187)||(7238091-7238220)
chr4 (69-186)||(48902529-48902646)
chr4 (58-154)||(7765232-7765328)
chr4 (80-184)||(7800218-7800322)
chr4 (57-149)||(45372427-45372519)
chr4 (80-184)||(48870123-48870227)
chr4 (80-184)||(48885809-48885913)
chr4 (27-183)||(48148022-48148181)
chr4 (84-184)||(45366618-45366718)
chr4 (85-185)||(48156825-48156925)
chr4 (80-186)||(7774222-7774328)
chr4 (36-186)||(7907904-7908054)
chr4 (51-140)||(37827358-37827447)
chr4 (16-187)||(33133615-33133789)
chr4 (97-149)||(45385197-45385249)
chr4 (51-187)||(49041502-49041638)
chr4 (51-186)||(50668622-50668757)
chr4 (97-184)||(48875427-48875514)
chr4 (84-186)||(49044626-49044728)
chr4 (58-154)||(7786054-7786150)
chr4 (84-184)||(48898303-48898403)
[»] chr8 (6 HSPs)
chr8 (24-150)||(15348477-15348603)
chr8 (55-175)||(12199897-12200017)
chr8 (55-175)||(12444325-12444445)
chr8 (67-174)||(12194892-12194999)
chr8 (67-174)||(12439320-12439427)
chr8 (16-181)||(4032245-4032410)
[»] chr5 (6 HSPs)
chr5 (19-149)||(29695768-29695898)
chr5 (85-184)||(1812006-1812105)
chr5 (84-147)||(29712866-29712929)
chr5 (84-147)||(42562728-42562791)
chr5 (85-146)||(178638-178699)
chr5 (51-147)||(29687669-29687765)
[»] scaffold0508 (1 HSPs)
scaffold0508 (33-149)||(11878-11994)
[»] chr1 (4 HSPs)
chr1 (24-149)||(24340030-24340155)
chr1 (34-146)||(24309796-24309908)
chr1 (88-185)||(24415417-24415514)
chr1 (85-141)||(24322086-24322142)
[»] chr6 (2 HSPs)
chr6 (84-186)||(21015355-21015457)
chr6 (33-187)||(21979990-21980144)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 11024866 - 11025066
Alignment:
Q  16 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgc 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024866 atgaacacaattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgc 11024965  T
Q  116 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagatacaggtcgg---tcttctccatctgtcttcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||   |||||||||||||||||||    
T  11024966 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattcatgaggcaaatacaggtcggtcttcttctccatctgtcttcc 11025065  T
Q  213 t 213  Q
    |    
T  11025066 t 11025066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 11015854 - 11016054
Alignment:
Q  16 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11015854 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgc 11015953  T
Q  116 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagatacaggtcgg---tcttctccatctgtcttcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||   |||||||||||||||||||    
T  11015954 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatacaggccggtcttcttctccatctgtcttcc 11016053  T
Q  213 t 213  Q
    |    
T  11016054 t 11016054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 11006291 - 11006492
Alignment:
Q  16 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgc 115  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |    
T  11006291 atgaacacaattctattagtgtgtgttctagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacac 11006390  T
Q  116 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagatacaggtcggtct---tctccatctgtcttcc 212  Q
    | ||||||||||| || ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||||   ||||||||||||||||    
T  11006391 acttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatacaggccggtcttcgtctccatctgtcttcc 11006490  T
Q  213 tt 214  Q
    ||    
T  11006491 tt 11006492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 47452271 - 47452407
Alignment:
Q  51 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctc 150  Q
    |||||||||||| | ||||||||||  | |||||||||||||||  |||||||||||| ||| ||| ||||| ||||  |||||||||||||| ||||||    
T  47452271 aagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctc 47452370  T
Q  151 aacatgatttgtacgatcaattcatgaggcagataca 187  Q
    | || ||| || |  ||||||||| |||| |||||||    
T  47452371 accaagatctggattatcaattcaagaggtagataca 47452407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 7771136 - 7770982
Alignment:
Q  33 agtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgaga 132  Q
    |||||||||||||| || ||||| |||||| || ||| |||||| | |||||||||||||||  ||||| |||||||||||||||||||||| ||| |||    
T  7771136 agtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataaga 7771037  T
Q  133 gacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagataca 187  Q
    ||||||||||| ||||||| ||  ||||| |  || | |||||||||||||||||    
T  7771036 gacttcaccggcaacctcatcagaatttggattattagttcatgaggcagataca 7770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 48862992 - 48862823
Alignment:
Q  17 tgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagctaaccatgacttacaaac 113  Q
    |||||| ||||||||  ||||||||||| |  | ||||| |||||| || |||||||||| | |||||   ||||||||||  ||||| ||||| |||||    
T  48862992 tgaacataattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaac 48862893  T
Q  114 gcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcaga 183  Q
    |||||||||||| || |||||||||||||||||||| | || |||| | | |||||||||||||||||||    
T  48862892 gcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 7789821 - 7789667
Alignment:
Q  33 agtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgaga 132  Q
    |||||||||||| | || ||||| |||||| || ||| |||||| | |||| ||||||| ||  ||||| |||||||||||||||||||||| ||| |||    
T  7789821 agtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataaga 7789722  T
Q  133 gacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagataca 187  Q
    ||||||||||| ||||||| ||  ||||| |  |||| |||||||||||||||||    
T  7789721 gacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 7789667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 7904745 - 7904610
Alignment:
Q  52 agttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctca 151  Q
    |||| |||||| || |||||||||| | |||||||||||||||  |||||| |||||||||| |||||||||||||| ||||||||||| || |||| ||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccaca 7904646  T
Q  152 acatgatttgtacgatcaattcatgaggcagataca 187  Q
     || |||||| |  ||||||||| |||| |||||||    
T  7904645 tcaagatttgaataatcaattcacgaggaagataca 7904610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 33134152 - 33134327
Alignment:
Q  16 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagctaaccatgacttacaaa 112  Q
    |||||||||||| || ||||||||||||  | ||  | || |||||| || |||||||||| | |||||   ||||||||||  || || | ||||||||    
T  33134152 atgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaa 33134251  T
Q  113 cgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagatacag 188  Q
    ||||||||||||| || ||||||||||||||||| |||||||  ||  | | ||||||||||||||||||||||||    
T  33134252 cgcatttgaaacgaataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagatacag 33134327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 48170956 - 48171087
Alignment:
Q  57 aaaatgcgattttgcaaagttatgatca---gagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaac 153  Q
    ||||||||| |||||||||| | |||||   ||||||||||| ||||| ||||||||||| |||||||||||||  ||||||||||||| |||||||| |    
T  48170956 aaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagc 48171055  T
Q  154 atgatttgtacgatcaattcatgaggcagata 185  Q
    |  ||||| || ||||||||| ||| ||||||    
T  48171056 agaatttgaactatcaattcaagagccagata 48171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 48891123 - 48891014
Alignment:
Q  51 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctc 150  Q
    ||||| ||||||||| |||||||| | | |||| |||| |||||  ||||| |||||||||||||||||||||||||| |||||||| |||| |||||||    
T  48891123 aagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctc 48891024  T
Q  151 aacatgattt 160  Q
    ||||| ||||    
T  48891023 aacataattt 48891014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 7822710 - 7822547
Alignment:
Q  24 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 123  Q
    |||||||  ||| |||||||||||||  | || ||| || || ||||||||||   |||||||||||||||  |||||||| |||||||| || ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  124 cgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagataca 187  Q
    ||||| ||| |||||||||| |||||||||| |||| | |  ||||| | ||||||||||||||    
T  7822610 cgtataagatacttcaccggcaacctcaacaagattaggattatcaaatgatgaggcagataca 7822547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 7813208 - 7813061
Alignment:
Q  37 tgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagact 136  Q
    |||||||||||||  | || ||| || || ||||||||||   | |||||||||||||  |||||||| |||||||| || ||||||||||| ||| |||    
T  7813208 tgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatact 7813109  T
Q  137 tcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagat 184  Q
    ||||||| |||||||||| |||| | |  ||||| |||||||||||||    
T  7813108 tcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 7877474 - 7877299
Alignment:
Q  11 gtgagatgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttaca 110  Q
    |||| ||| ||| |||||||  |||||| ||||  ||||  |||| |||||| || |||||||| ||  |||||||||||||||  ||||||  ||||||    
T  7877474 gtgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttaca 7877375  T
Q  111 aacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagatac 186  Q
    || ||||||||||||||| |||||||||||| | ||||  | || |||||| |  |||||||||||||| ||||||    
T  7877374 aatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatac 7877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 48735713 - 48735811
Alignment:
Q  85 gagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcaga 183  Q
    ||||||||||  ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||  |  ||||| || ||||| ||||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgaggcaga 48735811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 7238091 - 7238220
Alignment:
Q  58 aaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatga 157  Q
    ||||| || |||||||||| | | |||||||||||||  ||||| ||||||||||| ||||||||||  || ||||||||||| || ||||||| ||  |    
T  7238091 aaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaa 7238190  T
Q  158 tttgtacgatcaattcatgaggcagataca 187  Q
    |||| | ||| | |||||||||||||||||    
T  7238191 tttggatgattagttcatgaggcagataca 7238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 48902646 - 48902529
Alignment:
Q  69 tgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatc 168  Q
    ||||||||  |||||||| |||||||  ||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||| |  ||  ||||| | ||||    
T  48902646 tgcaaagtgctgatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatc 48902547  T
Q  169 aattcatgaggcagatac 186  Q
    ||||||||||| ||||||    
T  48902546 aattcatgaggtagatac 48902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 7765328 - 7765232
Alignment:
Q  58 aaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 154  Q
    ||||| || |||||||||| | |||||||||||| ||  |||||| ||||||||| ||| ||||||  || ||||||||||||||||||||||||||    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 7765232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 7800322 - 7800218
Alignment:
Q  80 gatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgagg 179  Q
    ||||||||| |||||  |||||||| |||||||| || ||||||||||| ||| |||||||||| |||||||||| |||| | |  ||||| ||||||||    
T  7800322 gatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgagg 7800223  T
Q  180 cagat 184  Q
    |||||    
T  7800222 cagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 45372427 - 45372519
Alignment:
Q  57 aaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct 149  Q
    |||||| || |||||||| | | |||||||||||| ||  ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||    
T  45372427 aaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacct 45372519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 48870227 - 48870123
Alignment:
Q  80 gatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgagg 179  Q
    |||| |||||||||   ||||| ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||  ||||| || |||||||||||| |    
T  48870227 gatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatg 48870128  T
Q  180 cagat 184  Q
    |||||    
T  48870127 cagat 48870123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 48885913 - 48885809
Alignment:
Q  80 gatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgagg 179  Q
    |||| |||||||||   ||||| ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||  ||||| || |||||||||||| |    
T  48885913 gatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatg 48885814  T
Q  180 cagat 184  Q
    |||||    
T  48885813 cagat 48885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 48148022 - 48148181
Alignment:
Q  27 tctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagctaaccatgacttacaaacgcatttgaaa 123  Q
    ||||| ||||||| ||| || ||  ||||||||||| || ||||| |||| | |||||   ||||||||||  ||||| |||||||| || |||||||||    
T  48148022 tctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaa 48148121  T
Q  124 cgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcaga 183  Q
    || || ||||||||||| ||||||||  | | |||||| || |||||||||| |||||||    
T  48148122 cgaataagagacttcactggtaaccttgaaaggatttgaactatcaattcatcaggcaga 48148181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 45366618 - 45366718
Alignment:
Q  84 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcaga 183  Q
    |||||||||||  |||||  ||||||||||||| ||||||||||| ||||||||||| |||||||| |  | |||||| |  |||||||||||||| |||    
T  45366618 agagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaaga 45366717  T
Q  184 t 184  Q
    |    
T  45366718 t 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 48156825 - 48156925
Alignment:
Q  85 gagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagat 184  Q
    ||||||||||  ||||| |||||||||||||| ||||||||||  |||||||||||||||||||  || | |||||| |  ||||||||| | |||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaattatcaattcaagtggcagat 48156924  T
Q  185 a 185  Q
    |    
T  48156925 a 48156925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 7774222 - 7774328
Alignment:
Q  80 gatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgagg 179  Q
    |||||||||||||||  ||||||  ||||||||| ||||||||| | || |||||||||||||| | || || || |||||| |  ||||||||||||||    
T  7774222 gatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgagg 7774321  T
Q  180 cagatac 186  Q
     ||||||    
T  7774322 aagatac 7774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 7908054 - 7907904
Alignment:
Q  36 gtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagac 135  Q
    |||| |||||| || ||||| |||||| || |||||||| |   || ||||||||||||  ||||||||||||| |||  | ||||||||| | ||||||    
T  7908054 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagac 7907955  T
Q  136 ttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagatac 186  Q
    |||||||| |||||||  | ||| || |  |||||||||||||| ||||||    
T  7907954 ttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaagatac 7907904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 37827358 - 37827447
Alignment:
Q  51 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcac 140  Q
    ||||| |||||| || ||||||||||   ||| ||| ||||||| |||||||||||||||||||||| | |||| ||| |||||||||||    
T  37827358 aagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 33133789 - 33133615
Alignment:
Q  16 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagctaaccatgacttacaaa 112  Q
    |||||||||||| || ||||||||||||  | ||  | || ||||||||| |||||||||| | |||||   ||||||||||  |||||   ||||||||    
T  33133789 atgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaaa 33133690  T
Q  113 cgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagataca 187  Q
     | |||||||||| || ||||||||||  |||||||| | ||  ||  | | |||||||||||||||||||||||    
T  33133689 tgaatttgaaacgaataagagacttcattggtaaccttagcagaataaggatgatcaattcatgaggcagataca 33133615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 45385197 - 45385249
Alignment:
Q  97 aaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct 149  Q
    ||||| |||||||||||| |||||||||||||||||||||| || ||||||||    
T  45385197 aaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaacct 45385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 49041502 - 49041638
Alignment:
Q  51 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctc 150  Q
    ||||| |||||| || |||||||| |   |||||||||||||||  ||||| ||||| ||||||||||||||||  || ||||||||||| || || |||    
T  49041502 aagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctc 49041601  T
Q  151 aacatgatttgtacgatcaattcatgaggcagataca 187  Q
    |  |  ||| | | |||||||||||||| ||||||||    
T  49041602 attagaattaggatgatcaattcatgagacagataca 49041638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 50668757 - 50668622
Alignment:
Q  51 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctc 150  Q
    |||||||||||| || || ||||| || ||||| ||||| ||||  ||||| || ||||||||||| ||||||||||| ||| | ||||| || ||||||    
T  50668757 aagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctc 50668658  T
Q  151 aacatgatttgtacgatcaattcatgaggcagatac 186  Q
    | ||  ||||| | ||||||||| | | ||||||||    
T  50668657 accaaaatttgaatgatcaattcgtaatgcagatac 50668622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 48875514 - 48875427
Alignment:
Q  97 aaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagat 184  Q
    ||||| ||||| ||||||||||||||||| || |||||||| || | |||||||| ||  ||||| |||||||| || ||||| ||||    
T  48875514 aaccaagacttgcaaacgcatttgaaacgaattagagacttgactgataacctcagcagaatttgaacgatcaagtcctgaggtagat 48875427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 49044626 - 49044728
Alignment:
Q  84 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcaga 183  Q
    |||||||||||  |||||| |||||||||| || ||||||||||  |||||| |||| || ||||||| ||  ||  | | |||||| ||||||||||||    
T  49044626 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcaga 49044725  T
Q  184 tac 186  Q
    |||    
T  49044726 tac 49044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 7786150 - 7786054
Alignment:
Q  58 aaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 154  Q
    ||||| || |||||||| | | |||||||||||| ||  | ||||  ||||||||||||||||||   ||| ||||| |||||||| ||||||||||    
T  7786150 aaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctcaaca 7786054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 48898403 - 48898303
Alignment:
Q  84 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcaga 183  Q
    ||||||||| |  ||||| ||||||||||| || ||||||||| | ||||||||||| ||||  |||| ||  ||||| | || |||||||||||| |||    
T  48898403 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaaga 48898304  T
Q  184 t 184  Q
    |    
T  48898303 t 48898303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 15348603 - 15348477
Alignment:
Q  24 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 123  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||||| |||||||||||||||||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  124 cgtatgagagacttcaccggtaacctc 150  Q
    ||||| |||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaacctc 15348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 12200017 - 12199897
Alignment:
Q  55 tcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 154  Q
    |||| |||||| |||||||||| | |||||||||||||||  ||||||||||||||||| |||||||||| ||  |||||||||||||| ||||||| ||    
T  12200017 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12199918  T
Q  155 tgatttgtacgatcaattcat 175  Q
     |||||| | ||| |||||||    
T  12199917 ggatttgaatgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 12444445 - 12444325
Alignment:
Q  55 tcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 154  Q
    |||| |||||| |||||||||| | |||||||||||||||  ||||||||||||||||| |||||||||| ||  |||||||||||||| ||||||| ||    
T  12444445 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12444346  T
Q  155 tgatttgtacgatcaattcat 175  Q
     |||||| | ||| |||||||    
T  12444345 ggatttgaatgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 12194999 - 12194892
Alignment:
Q  67 tttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacga 166  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||| ||||||||||| ||  |||||||||||||| ||||||| || |||||| | ||    
T  12194999 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12194900  T
Q  167 tcaattca 174  Q
    | ||||||    
T  12194899 ttaattca 12194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 12439427 - 12439320
Alignment:
Q  67 tttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacga 166  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||| ||||||||||| ||  |||||||||||||| ||||||| || |||||| | ||    
T  12439427 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12439328  T
Q  167 tcaattca 174  Q
    | ||||||    
T  12439327 ttaattca 12439320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 4032245 - 4032410
Alignment:
Q  16 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgc 115  Q
    |||| ||||| ||||| | ||||||||  || || || || ||||||||| |||||||||| | ||||||| ||||||| |||||| || |||||||| |    
T  4032245 atgatcacaagtctatgaatgtgtgttttagaggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacac 4032344  T
Q  116 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggca 181  Q
    | ||||||||||| ||||||||||  ||||  ||||  | |||||| | |||||||||||||||||    
T  4032345 acttgaaacgtataagagacttcattggtagtctcagtaagatttggatgatcaattcatgaggca 4032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 29695898 - 29695768
Alignment:
Q  19 aacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatt 118  Q
    |||| ||||||||| |||||||| || |||| ||||| |||||| || |||||||||| | | | ||| ||||||| ||||||| |||||||||||||||    
T  29695898 aacataattctattcgtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatt 29695799  T
Q  119 tgaaacgtatgagagacttcaccggtaacct 149  Q
    ||||||| || |||||||| || ||||||||    
T  29695798 tgaaacgaataagagacttgactggtaacct 29695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 1812105 - 1812006
Alignment:
Q  85 gagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagat 184  Q
    ||||||||||  |||||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||||  ||||| ||||||| ||| ||||| ||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaacaaaatttgaacgatcagttcctgaggaagat 1812006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 29712866 - 29712929
Alignment:
Q  84 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 147  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  84 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 147  Q
    |||||| ||||  ||||| ||||||||||||||||||||||| || ||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  85 gagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaa 146  Q
    ||||| |||| |||||| ||||||||||| ||||||||||| || |||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 29687765 - 29687669
Alignment:
Q  51 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 147  Q
    ||||| |||||| || |||||||||| | | | ||| || ||||  ||||| ||||||||||| || ||||| ||||| ||||||||||| ||||||    
T  29687765 aagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaac 29687669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 11994 - 11878
Alignment:
Q  33 agtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgaga 132  Q
    ||||||||||| ||  | ||||| |||||| || |||||||||| || ||||||||||||||  |||||||||||||||||| |||||||||| || |||    
T  11994 agtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataaga 11895  T
Q  133 gacttcaccggtaacct 149  Q
    ||||| | |||||||||    
T  11894 gacttaatcggtaacct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 24340155 - 24340030
Alignment:
Q  24 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 123  Q
    |||||||  ||||||||||||||  | || || ||| || || |||||||||| || |||||||||||| |  |||||||||||||||||  ||||||||    
T  24340155 aattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaa 24340056  T
Q  124 cgtatgagagacttcaccggtaacct 149  Q
    || || |||||||| |||||||||||    
T  24340055 cgaataagagacttaaccggtaacct 24340030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 24309908 - 24309796
Alignment:
Q  34 gtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagag 133  Q
    |||||||||| ||  | ||||| |||||| || |||||||||| |  ||||||||||||||  |||||| ||||||||||| |||||||||| || ||||    
T  24309908 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 24309809  T
Q  134 acttcaccggtaa 146  Q
    |||| ||||||||    
T  24309808 acttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 24415514 - 24415417
Alignment:
Q  88 ataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagata 185  Q
    |||||||  ||||| ||||||| ||||||||||||||| || |||||||| |||||||| ||||| | ||||||   ||||||||||| |||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagata 24415417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 24322142 - 24322086
Alignment:
Q  85 gagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcacc 141  Q
    ||||||||||  ||||| ||||||||||||||||||||||| || ||||||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 21015457 - 21015355
Alignment:
Q  84 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcaga 183  Q
    |||||||||||  ||| || |||||||||| || ||||||||||  |||||| | ||||||||||||||||  ||| | | ||||||||| |||||||||    
T  21015457 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaggatgatcaattcttgaggcaga 21015358  T
Q  184 tac 186  Q
    |||    
T  21015357 tac 21015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 21979990 - 21980144
Alignment:
Q  33 agtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgaga 132  Q
    |||||||||||| | || ||| |||||||| || || ||||||||  ||| |||||| ||||  ||||| ||||||||||| || |||||||||  ||||    
T  21979990 agtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagaga 21980089  T
Q  133 gacttcaccggtaacctcaacatgatttgtacgatcaattcatgaggcagataca 187  Q
    ||||| || ||| |||| | || |||||  |  |||| |||||||||||||||||    
T  21980090 gactttactggttaccttagcaggatttcgattatcagttcatgaggcagataca 21980144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University