View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_5 (Length: 399)
Name: NF2776_low_5
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 53618276 - 53618670
Alignment:
| Q |
1 |
ttactgtgaatggatgttatacattcaagttacttgaacaggttgactgggttttccgtttgggcatatttactctgtttggcttgctgccaagtttcat |
100 |
Q |
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||||||| |||||| |||||||| |||||||||||||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618276 |
ttactgttgatggattttatacatacaagttacttgaacagagttactggtttgtccgtttgggcatatttactctgtttggcttgctgccaagtttcat |
53618375 |
T |
|
| Q |
101 |
ttggtggttgttgagccttttccgaaccttactagttaataattttgttgcagaatggaataatgcaaactcacgatgaagaaactcgaaagtttttcaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53618376 |
ttggtgtttgttgagccttttccgaaccttactagttaataattttgttgcagaatggaataatgcaaactcatgatgaagaaactcgaaagtttttcaa |
53618475 |
T |
|
| Q |
201 |
gcattcttcagtttcatgtgtgttgtcacctcgatatgccagcagtaagcttagcattttcaagcagcaggcatgctttatgctatggtttagtagcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618476 |
gcattcttcagtttcatgtgtgttgtcacctcgatatgccagcagtaagcttagcattttcaagcagcaggcatgctttatgctatggtttagtagcttt |
53618575 |
T |
|
| Q |
301 |
cctagactgttttatgtttcttttaagaagttatgcatactatttcattatttccattctttcattacatcactctagttttaatatattcttgg |
395 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53618576 |
cctagacttttttatgtttcttttaagaagttatgcatactatttcattatttccattctttcattacatcactctagttttaatatattattgg |
53618670 |
T |
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