View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_6 (Length: 391)
Name: NF2776_low_6
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 2 - 356
Target Start/End: Original strand, 35755242 - 35755596
Alignment:
| Q |
2 |
cctcttcctcttcctctattcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgtattctctccttctgctatatc |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35755242 |
cctcttcctcttcctctattcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgttttctctccttctgctatatc |
35755341 |
T |
|
| Q |
102 |
catcccatgttccccaattcccactcccaccagttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgaga |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755342 |
catcccatgttccccaattcccactcccaccatttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgaga |
35755441 |
T |
|
| Q |
202 |
atcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgttcccaagagtttgtttcattattttcatgttgattt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755442 |
atcattgtgactattttgccaaccatattgttttgcatgttcatcaattggaggaagatattgttcccaagagtttgtttcattattttcatgttgattt |
35755541 |
T |
|
| Q |
302 |
gattcccatccctgaccagcataatttggctcagaaggttttctaacttcttctt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35755542 |
gattcccatccctgaccagcataatttggctcagaaggctttctaacttcttctt |
35755596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 345
Target Start/End: Original strand, 35765874 - 35766211
Alignment:
| Q |
2 |
cctcttcctcttcctctattcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgtattctctccttctgctatatc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || |||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||| |||||| |
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| T |
35765874 |
cctcttcctcttcctctattcatctgatagtcactagtgccatgatgatatccagggttcttagaccatgacatgttgt---ctctccttctgttatatc |
35765970 |
T |
|
| Q |
102 |
catcccatgttccccaattcccactcccaccagttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgaga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||||| || ||||||||||||||| ||| ||||| |
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|
| T |
35765971 |
catcccatgttccccaattcccactcccaccatttcttcc---ttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccgcctttgaga |
35766067 |
T |
|
| Q |
202 |
atcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgttcccaagagtttgtttcattattttcatgttgattt |
301 |
Q |
| |
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|| ||| || | ||||| ||| ||||||||||||||| ||| ||||| | || ||| ||||||| ||||||||||||| |||||||||||| || |
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| T |
35766068 |
attattctgcccatttttccatccatattcttttgcacgtttatcaacagaagcccaataacgttcccaggagtttgtttcatcattttcatgttggttc |
35766167 |
T |
|
| Q |
302 |
gattcccatccctgaccagcataatttggctcagaaggttttct |
345 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||||| |
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|
| T |
35766168 |
aattcccatccttgagaagcataatttggttcagaaggttttct |
35766211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 353
Target Start/End: Original strand, 35760396 - 35760739
Alignment:
| Q |
4 |
tcttcctcttcctctattcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgtattctctccttctgctatatcca |
103 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| | |||| || || | | ||| | |||||||| |||||||| ||||||| ||||| |||||||| |
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|
| T |
35760396 |
tcttcttcttcctctattcatctgatattcattagtaccatgataatgtccggggttattagaccacgacatgtt---ttctctctttctgttatatcca |
35760492 |
T |
|
| Q |
104 |
tcccatgttccccaattcccactcccaccagttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgagaat |
203 |
Q |
| |
|
||||||| ||||||||| ||| ||| ||| |||||||||| | ||||||||||||||||| ||||||| |||||| ||||| |||| | ||| ||| |
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|
| T |
35760493 |
tcccatgctccccaatttccatgcccgccatttcttccttgat---acttgttatgcaagtcagcaccatattgctccgtctgattccatccatgataat |
35760589 |
T |
|
| Q |
204 |
cattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgttcccaagagtttgtttcattattttcatgttgatttga |
303 |
Q |
| |
|
|||| || | |||| |||||||||||||||||| ||||||| ||| |||| | |||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
35760590 |
cattttggccatttcgccaaccatattcttttgaatgttcaacaacaggagcacgatactgttcccaagagtttgtttcattattttcatgttggttcga |
35760689 |
T |
|
| Q |
304 |
ttcccatccctgaccagcataatttggctcagaaggttttctaacttctt |
353 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||| ||| | ||||||| |
|
|
| T |
35760690 |
ttcccatccctgagcagcataattcggttcagaaggctttgttacttctt |
35760739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 339
Target Start/End: Original strand, 35798832 - 35799158
Alignment:
| Q |
4 |
tcttcctcttcctctattcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgtattctctccttctgctatatcca |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||| ||||| | ||||| |||||||||| |||||||||| |||| || ||||| |||||||| |
|
|
| T |
35798832 |
tcttcttcttcctctattcatctgatactcattagtgccatgatgatatccagggttcttagaccaagacatgttgttttctttctttctgttatatcca |
35798931 |
T |
|
| Q |
104 |
tcccatgttccccaattcccactcccaccagttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgagaat |
203 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||| ||| ||||||||||| |||||||||||||| ||||||||||| |||| | |||||||| |
|
|
| T |
35798932 |
tcccatgttccccaatttccact------atttcttcc---ttgatacttgttatgaaagtcaccaccatatcgctccctctgattccatccctgagaat |
35799022 |
T |
|
| Q |
204 |
cattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgttcccaagagtttgtttcattattttcatgttgatttga |
303 |
Q |
| |
|
|||| |||| ||||||||| |||| |||||||||| | |||| || | | |||| ||||| || ||||||||||||||||||||||||| ||||| |
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|
| T |
35799023 |
cattctgaccattttgccatccatgttcttttgcagcatgttcaacgggcgcatgatactgttcacataagtttgtttcattattttcatgttggtttga |
35799122 |
T |
|
| Q |
304 |
ttcccatccctgaccagcataatttggctcagaagg |
339 |
Q |
| |
|
||| |||||| || ||||||||||||| |||||||| |
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|
| T |
35799123 |
ttcgcatcccagagcagcataatttggttcagaagg |
35799158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 54 - 282
Target Start/End: Original strand, 35785423 - 35785648
Alignment:
| Q |
54 |
cagggctcttagaccatgacatgttgtattctctccttctgctatatccatcccatgttccccaattcccactcccaccagttcttccttgttggtactt |
153 |
Q |
| |
|
||||| || |||||| ||||| |||| ||||||| ||||| |||| |||||||||||| ||||||| | | ||| |||| |||||||||| | | || |
|
|
| T |
35785423 |
cagggttcatagaccgagacatcttgttttctctctttctgttatacccatcccatgttgcccaattactattccaaccatttcttccttgat---attt |
35785519 |
T |
|
| Q |
154 |
gttatgcaagtcaccaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattcttttgcatgttcatcaattgga |
253 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| |
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|
| T |
35785520 |
gttatgcaagttgccaccatagttctccctctgaatccacctctgagaatcattctgactatttttccacccatattcttttgcatgttcatcaacagga |
35785619 |
T |
|
| Q |
254 |
ggaagatattgttcccaagagtttgtttc |
282 |
Q |
| |
|
| | |||| |||||||||||||||||||| |
|
|
| T |
35785620 |
gcatgatactgttcccaagagtttgtttc |
35785648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 371
Target Start/End: Original strand, 35789204 - 35789568
Alignment:
| Q |
4 |
tcttcctcttcctctattcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgtattctctccttctgctatatcca |
103 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| | |||| || || | ||||| || |||||||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
35789204 |
tcttcttcttccactattcatctgatactcattagttccatgatcatatccagggttcgtagaccatgatatgttgttttctctccttctgttatatcca |
35789303 |
T |
|
| Q |
104 |
tcccatgttccccaattcccactcccaccagttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgagaat |
203 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||| ||| ||||||||||| |||||||||||||| |||||||||||| |||| | ||||||| |
|
|
| T |
35789304 |
tcccatgtcccccaatttccact------atttcttcc---ttgatacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaat |
35789394 |
T |
|
| Q |
204 |
cattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgttcccaagagtttgtttcattattttcatgttgatttga |
303 |
Q |
| |
|
|||| |||| ||||| ||| ||||||||||||||| | ||||| |||| | ||| |||| |||| ||||| ||| |||||| ||||||| || || |
|
|
| T |
35789395 |
cattctgaccatttttccatccatattcttttgcagcatgttcaatgggagcatcatactgtttccaaaagtttttttggttatttccatgttggttcga |
35789494 |
T |
|
| Q |
304 |
ttcccatccctgaccagcataatttggctcagaagg-ttttctaact-----tcttcttcgtccccccatcctg |
371 |
Q |
| |
|
|||||||||| || || ||| |||||| ||| |||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
35789495 |
ttcccatccccgagcaacatcatttggttcataaggctttgttaacttttcgtcttcttcgtccccccatcctg |
35789568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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