View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2776_low_9 (Length: 307)
Name: NF2776_low_9
Description: NF2776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2776_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 27790167 - 27789887
Alignment:
| Q |
13 |
tcaaaatcaccaaaatcggaaaagtccactttagcgtttgtttcattaagcgagccaccttcttgggagagtttcaatgcttgcacagtcttgtaannnn |
112 |
Q |
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| T |
27790167 |
tcaaaatcaccaaaatcggaaaagtccactttagcgtttgtttcattaagcgagtcaccttcttgggagagtttcaatgcttgcacagccttgtagtttt |
27790068 |
T |
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| Q |
113 |
nnncaagcatagataacacattcttttgtctaaacaatgaaccaagagttttgttttttctgttaaaacaaatccttaaaaatccatcccatttcatcat |
212 |
Q |
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| T |
27790067 |
tttcaaccatagataacacattcttttgtctaaacaatgaaccaagagttttgttttttctgttaaaacaaatccttaaaaatccatcccatttcatcat |
27789968 |
T |
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| Q |
213 |
cgtttgcactcaattcttaccacaaaggaatcaaccttaggtgtaggtctgaaattgtttcttccaactttgaggaggtgg |
293 |
Q |
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| T |
27789967 |
cgttcgcactcaattcttaccacaaaggaatcaaccttaggtggaggtctgaaattgtttcttccaactttgaggaggtgg |
27789887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 1158911 - 1159045
Alignment:
| Q |
69 |
accttcttgggagagtttcaatgcttgcacagtcttgtaannnnnnncaagcatagataacacattcttttgtctaaacaatgaaccaagagttttgttt |
168 |
Q |
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| T |
1158911 |
accttcttgcgagagttttagtgcctgcacagtcttgtaattcttttcaagcatagatatcacattcttttgcctgaatattgcaccaagtgttttgttc |
1159010 |
T |
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| Q |
169 |
tttctgttaaaacaaatccttaaaaatccatccca |
203 |
Q |
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| T |
1159011 |
tttctgttaaaacaaatccttaaaaatccatccca |
1159045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 1159101 - 1159153
Alignment:
| Q |
240 |
gaatcaaccttaggtgtaggtctgaaattgtttcttccaactttgaggaggtg |
292 |
Q |
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| T |
1159101 |
gaatcaacctttggtggaggcctgaaattgtttcttccaactttaagaaggtg |
1159153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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