View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2777_high_3 (Length: 410)
Name: NF2777_high_3
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2777_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 38 - 380
Target Start/End: Complemental strand, 39519878 - 39519536
Alignment:
| Q |
38 |
tgaagccaatggatgctgagcaactgagagagcaaggtcataagatggttgatttcattgctgattactacaaaaccattgaaaattttccagttcttag |
137 |
Q |
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| T |
39519878 |
tgaaggcaatggatgctgagcaactgagagaacaaggtcatatgatggttgatttcattgctgattactacaaaaccattgaaaattttccagttcttag |
39519779 |
T |
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| Q |
138 |
ccaagttcaggttctctttctatccattttcatctaatatttgttactgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaa |
237 |
Q |
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| T |
39519778 |
ccaagttcaggttctctttctatccattttcatctaatatttgttattgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaa |
39519679 |
T |
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| Q |
238 |
agcttcttccagattctgctcctactcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaattaattgacctttgcttgtt |
337 |
Q |
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| T |
39519678 |
agcttcttccagattctgctcctactcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaattaattgacctttgcttgtt |
39519579 |
T |
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| Q |
338 |
tgtttttatttactcattatttgtcatactttgtttttggtca |
380 |
Q |
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| T |
39519578 |
tgtttttatttactcattatttgtcatactttgtttttggtca |
39519536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 38 - 320
Target Start/End: Complemental strand, 39532336 - 39532054
Alignment:
| Q |
38 |
tgaagccaatggatgctgagcaactgagagagcaaggtcataagatggttgatttcattgctgattactacaaaaccattgaaaattttccagttcttag |
137 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
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| T |
39532336 |
tgaaggcaatggatgctgagcaactgagagaacaaggtcatatgatggttgatttcattgctgattactacaaaacaattgaaaatttccctgttcttag |
39532237 |
T |
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| Q |
138 |
ccaagttcaggttctctttctatccattttcatctaatatttgttactgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaa |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39532236 |
ccaagttcaggttctctttctatccattttcatctaatatttgttactgtttcaatttctttcaatatttttaccccattgcagccaggttatcttggaa |
39532137 |
T |
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| Q |
238 |
agcttcttccagattctgctcctactcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaatta |
320 |
Q |
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| T |
39532136 |
agcttctaccagattctgctcctactcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaatta |
39532054 |
T |
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