View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2777_high_5 (Length: 362)
Name: NF2777_high_5
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2777_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 45214393 - 45214064
Alignment:
| Q |
18 |
gttgtgagagtaaatgttcatcattggttagtcatattgaccatatattataatctttgttggtgacaatnnnnnnnn-tgttgatcaatagtgaaattt |
116 |
Q |
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| T |
45214393 |
gttgtgagagtaaatgttgatcattggttagtcatattgaccatata-----atctttgttggtgacaataaaaaaaaatgttgatcaatagtgaacttt |
45214299 |
T |
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| Q |
117 |
ggtgttctataaaccatttgttttttcacaagggacaatatgcttgaccaaaggtaggagtcatttttgatatcgctctcaaccacagatgaagatgtcg |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45214298 |
ggtgttctataaacaatttgttttttcacaagggacaatatgcttgaccaaaggtgggagtcatttttgatatcgctctcaaccacagatggagatgtcg |
45214199 |
T |
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| Q |
217 |
ttcctt-cccatatatttatcatatcgattttgttttcccaatgttgaagagcatgatagtgatcgaagttcctccaatatgttcaatattaacgcatga |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45214198 |
ttcctttcccatatatttatcatatcgattttgttttcccaatgttgaagagcatgatagtgatcgaagttcctccaatatgttcaatattaacgcatca |
45214099 |
T |
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| Q |
316 |
aaaagagatatgatagttgtcctctaactcacctt |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
45214098 |
aaaagagatatgatagttgtcctctaactcacctt |
45214064 |
T |
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