View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2777_low_1 (Length: 554)

Name: NF2777_low_1
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2777_low_1
NF2777_low_1
[»] chr3 (3 HSPs)
chr3 (14-538)||(49406148-49406670)
chr3 (490-537)||(48886120-48886167)
chr3 (491-535)||(51305187-51305231)
[»] chr1 (1 HSPs)
chr1 (17-486)||(52269848-52270311)
[»] chr7 (3 HSPs)
chr7 (487-538)||(12117082-12117133)
chr7 (493-539)||(38970777-38970823)
chr7 (486-535)||(45548787-45548836)
[»] chr4 (5 HSPs)
chr4 (491-538)||(53346987-53347034)
chr4 (489-537)||(33524113-33524161)
chr4 (487-535)||(13093567-13093615)
chr4 (489-535)||(19273540-19273586)
chr4 (489-535)||(35810018-35810064)
[»] chr2 (3 HSPs)
chr2 (491-538)||(5144663-5144710)
chr2 (488-537)||(7762478-7762527)
chr2 (494-537)||(13150908-13150951)
[»] chr5 (2 HSPs)
chr5 (492-538)||(4938817-4938863)
chr5 (491-535)||(39239172-39239216)
[»] chr8 (3 HSPs)
chr8 (487-538)||(30528939-30528990)
chr8 (488-535)||(40284232-40284279)
chr8 (489-535)||(26245255-26245301)
[»] chr6 (2 HSPs)
chr6 (489-535)||(26653554-26653600)
chr6 (489-535)||(26759522-26759568)


Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 14 - 538
Target Start/End: Original strand, 49406148 - 49406670
Alignment:
Q  14 agaagccattggaacccataatccatcaagaaaattatgcaaaaacaccccgtgatcacggtatgagaatgctagtatataagagccgctgcattgcaaa 113  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||    
T  49406148 agaagccattggaacccataatccgtcaagaacattatgcaaaaacaccccgtggccacggtatgagaatgcttgtatatgagagccgctgcattgcaaa 49406247  T
Q  114 tcacataacgcctttgtgagcgctgagcaggaacttaaacctctttaaccattttccccaaatgtgcaaagatgtgtgatatatctcagtcaaaagtatc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||    
T  49406248 tcacataacgcctttgtgagcgctgagcaggaacttaaacctctttaaccatttcccccaaatgtgcaaagatgtgtgatatatctca----aaagtatc 49406343  T
Q  214 ttactctgtttgatattcaattgcatagatttaaataataattttagattcatgatgaaccaagtactggtgtggactacatcctgttggtatttggccg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49406344 ttactctgtttgatattcaattgcatagatttaaataataattttagattcatgatgaaccaagtactggtgtggactacatcctgttggtatttggccg 49406443  T
Q  314 ttatgcttcgtgtgatgaaaaattcttgcaatttccttcatgttctgtattgtgggatctaatcttttagggaagaaaggaggcaaggtttcaatacgag 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49406444 ttatgcttcgtgtgatgaaaaattcttgcaatttccttcatgttctatattgtgggatctaatcttttagggaagaaaggaggcagggtttcaatacgag 49406543  T
Q  414 caaagcaaaatatgcaagtgttggctagacttttgattttcctttctttttcttatttcatcatcaatggtgtcat--aagaccatttacaatggcctat 511  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  49406544 caaagcaaaatatgcaagtgttggctagacttttgatttccctttctttttcttatttcatcatcaatggtgtcataaaagaccatttacaatggcctat 49406643  T
Q  512 tgaatgccattttcaacatattgaaac 538  Q
    |||||||||||||||||||||||||||    
T  49406644 tgaatgccattttcaacatattgaaac 49406670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 537
Target Start/End: Original strand, 48886120 - 48886167
Alignment:
Q  490 aagaccatttacaatggcctattgaatgccattttcaacatattgaaa 537  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  48886120 aagaccatctacaatggcttattgaatgccattttcaacctattgaaa 48886167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 535
Target Start/End: Complemental strand, 51305231 - 51305187
Alignment:
Q  491 agaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||| | ||||||||||| |||||||| ||||    
T  51305231 agaccatttacaatggcttgttgaatgccatattcaacatgttga 51305187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 52270311 - 52269848
Alignment:
Q  17 agccattggaacccataatccatcaagaaaattatgcaaaaacaccccgtgatcacggtatgagaatgctagtatataagagccgctgcattgcaaatca 116  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||| ||||  || ||||||||||| |||||||||     | |||   ||||||||||    
T  52270311 agccattggaacccataatccatcctgaacattatgcaaaaacaccacgtggccatggtatgagaattctagtatat-----ctgctatgttgcaaatca 52270217  T
Q  117 cataacgcctttgtgagcgctgagcaggaacttaaacctctttaaccattttccccaaatgtgcaaagatgtgtgatatatctcagtca-aaagtatctt 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||           || |||| |||||  |  ||||||||||    
T  52270216 cataacgcctttgtgagcactgagcaggaacttaaacctctttagccattttccccaaatg-----------gtcatatttctcaaactcaaagtatctt 52270128  T
Q  216 actctgtttgatattcaattgcatagatttaaataataattttagattcatgatga---accaagtactggtgt---ggactacatcctgttggtatttg 309  Q
    |||||| ||| ||||||||| || | ||||||||||||||||||||||||||||||   |||||||| ||||||   ||||||| |||| ||||||||||    
T  52270127 actctgcttggtattcaattacacaaatttaaataataattttagattcatgatgatgaaccaagtagtggtgtagtggactacttcctattggtatttg 52270028  T
Q  310 gccgttatgcttcgtgtgatgaaaaa-ttcttgcaatttccttcatgttctgtattgtgggatctaatcttttagggaagaaaggaggcaaggtttcaat 408  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  52270027 gccgttatgcttcctgtgatgaaaaaattcttgcaatttccttcatgttttgtattgtgggatctaaccttttagggaagaaaggagacaaggtttcaat 52269928  T
Q  409 acgagcaaagcaaaatatgcaagtgttggctagacttttgattttcctttc--tttttcttatttcatcatcaatggtgt 486  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||  ||||| | |||||||||| || |||||    
T  52269927 acgagcaaagcaaaatatgcaggtgttggctagacttttgatttccctttccttttttttgatttcatcattaacggtgt 52269848  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 12117133 - 12117082
Alignment:
Q  487 cataagaccatttacaatggcctattgaatgccattttcaacatattgaaac 538  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12117133 cataagaccatttacaatggcctattgaaggccattttcaacatattgaaac 12117082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 38970823 - 38970777
Alignment:
Q  493 accatttacaatggcctattgaatgccattttcaacatattgaaact 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38970823 accatttacaatggcctattgaatgccattttcaacatattgaaact 38970777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 535
Target Start/End: Original strand, 45548787 - 45548836
Alignment:
Q  486 tcataagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    |||||||||||||||||||||| | |||||| |||| |||||||| ||||    
T  45548787 tcataagaccatttacaatggcttgttgaataccatattcaacatgttga 45548836  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 538
Target Start/End: Original strand, 53346987 - 53347034
Alignment:
Q  491 agaccatttacaatggcctattgaatgccattttcaacatattgaaac 538  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53346987 agaccatttacaatggcctattgaatgccattttcaatatattgaaac 53347034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 537
Target Start/End: Complemental strand, 33524161 - 33524113
Alignment:
Q  489 taagaccatttacaatggcctattgaatgccattttcaacatattgaaa 537  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  33524161 taagaccatctacaatggcttattgaatgccattttcaacctattgaaa 33524113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 535
Target Start/End: Original strand, 13093567 - 13093615
Alignment:
Q  487 cataagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  13093567 cataagaccatttacaatggcttgttgaatgccatattcaacatgttga 13093615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 19273586 - 19273540
Alignment:
Q  489 taagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  19273586 taagaccatttacaatggcttgttgaatgccatattcaacatgttga 19273540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 35810064 - 35810018
Alignment:
Q  489 taagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  35810064 taagaccatttacaatggcttgttgaatgccatattcaacatgttga 35810018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 538
Target Start/End: Original strand, 5144663 - 5144710
Alignment:
Q  491 agaccatttacaatggcctattgaatgccattttcaacatattgaaac 538  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5144663 agaccatttacaatggcctattgaatgccattttcaatatattgaaac 5144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 7762478 - 7762527
Alignment:
Q  488 ataagaccatttacaatggcctattgaatgccattttcaacatattgaaa 537  Q
    |||||||||||||||||||| | ||||||||||||||||| || ||||||    
T  7762478 ataagaccatttacaatggcttgttgaatgccattttcaatatgttgaaa 7762527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 537
Target Start/End: Original strand, 13150908 - 13150951
Alignment:
Q  494 ccatttacaatggcctattgaatgccattttcaacatattgaaa 537  Q
    |||| |||||||| |||||||||||||||||||| |||||||||    
T  13150908 ccatatacaatggtctattgaatgccattttcaatatattgaaa 13150951  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 4938863 - 4938817
Alignment:
Q  492 gaccatttacaatggcctattgaatgccattttcaacatattgaaac 538  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  4938863 gaccatttacaatggcctattgaatgtcattttgaacatattgaaac 4938817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 535
Target Start/End: Complemental strand, 39239216 - 39239172
Alignment:
Q  491 agaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||| | ||||||||||| |||||||| ||||    
T  39239216 agaccatttacaatggcttgttgaatgccatattcaacatgttga 39239172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 538
Target Start/End: Original strand, 30528939 - 30528990
Alignment:
Q  487 cataagaccatttacaatggcctattgaatgccattttcaacatattgaaac 538  Q
    ||||||||||||||||||||| |||||||||  |||||||| ||||||||||    
T  30528939 cataagaccatttacaatggcatattgaatgttattttcaatatattgaaac 30528990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 40284279 - 40284232
Alignment:
Q  488 ataagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    |||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  40284279 ataagaccatttacaatggcttgttgaatgccatattcaacatgttga 40284232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 26245301 - 26245255
Alignment:
Q  489 taagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  26245301 taagaccatttacaatggcttgttgaatgccatattcaacatgttga 26245255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 26653554 - 26653600
Alignment:
Q  489 taagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  26653554 taagaccatttacaatggcttgttgaatgccatattcaacatgttga 26653600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 26759522 - 26759568
Alignment:
Q  489 taagaccatttacaatggcctattgaatgccattttcaacatattga 535  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  26759522 taagaccatttacaatggcttgttgaatgccatattcaacatgttga 26759568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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