View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2777_low_10 (Length: 288)
Name: NF2777_low_10
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2777_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 48491169 - 48490898
Alignment:
| Q |
3 |
cagagagtagacctttttatgagtgaatgctttctaaaggggttatgtaattaaatggcttaatgatgagtgaagcaaagtggtagaagtgtaaccttgt |
102 |
Q |
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| T |
48491169 |
cagagagtagacctttttatgagtgaatgctttctaaaggggctatgtaattaaatggcttaatgatgagtgaagcaaagtggtagaagtgtaaccttgt |
48491070 |
T |
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| Q |
103 |
tcattagagctataatttactatttctatccatgtatagttgtgttttttcaatctaatctaataataattctgattgtggttctctattgtccttatta |
202 |
Q |
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| T |
48491069 |
tcattagagctataatttactatttctatccatgtatagttgtgttttttcaatctaatctaataataatgatgattgtggttctctattgtccttatta |
48490970 |
T |
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| Q |
203 |
tttattctctattgagtttcacaaataagcaaacatatgcgatggttgggtgcctttagcattggttcggta |
274 |
Q |
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| T |
48490969 |
tttattctctattgagtttcacaaataagcaaacatatgcgatggttgggtgcctttagcattggtccggta |
48490898 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 45062962 - 45063021
Alignment:
| Q |
3 |
cagagagtagacctttttatgagtgaatgctttctaaaggggttatgtaattaaatggct |
62 |
Q |
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||||| ||||||||||||||||||||||| ||| | ||||| |||||||||||||||| |
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| T |
45062962 |
cagagtgtagacctttttatgagtgaatgttttattaagggacaatgtaattaaatggct |
45063021 |
T |
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