View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2777_low_11 (Length: 286)

Name: NF2777_low_11
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2777_low_11
NF2777_low_11
[»] chr1 (3 HSPs)
chr1 (10-270)||(49491406-49491671)
chr1 (158-229)||(50903193-50903264)
chr1 (157-229)||(34565961-34566033)
[»] chr7 (2 HSPs)
chr7 (157-224)||(29465232-29465299)
chr7 (157-229)||(26449271-26449342)
[»] chr3 (2 HSPs)
chr3 (157-270)||(16893306-16893428)
chr3 (157-268)||(24347358-24347478)
[»] chr5 (3 HSPs)
chr5 (157-229)||(31529414-31529486)
chr5 (157-226)||(32843731-32843800)
chr5 (168-229)||(36150390-36150451)
[»] chr4 (1 HSPs)
chr4 (157-229)||(9241771-9241843)
[»] scaffold0753 (1 HSPs)
scaffold0753 (157-229)||(5182-5254)
[»] chr2 (1 HSPs)
chr2 (157-229)||(8413586-8413658)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 49491406 - 49491671
Alignment:
Q  10 gcacagaatgttcaaagaagttttctactcataacaatttgaattttcttttcggccctctaagtgctcgtgcgtcttgttcttcaaatcctaaaattcn 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||      
T  49491406 gcacagaatgttcaaagaagttttctactcataacaatttgaattttcttcttggccctctaagtgctcgtgcatcttgttcttcaaatcctaaaattaa 49491505  T
Q  110 nnnnnn---tgggagattttgaatgtgttttattatgtacnnnnnnnnnn--atcaagtaaagaaattctataaaagacttggagagggttagaatcctt 204  Q
             |||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||| |||||||||| |||| ||||    
T  49491506 aaaaaaaaatgggagattttgaatgtgttttattatgtactcttttttttttatcaagtaaagaaattctataaaagacctggagagggtcagaaccctt 49491605  T
Q  205 aacagcaaaagtgcttacatcaaaaggtgcaaaatattacatcacaaagatctataataaggaagg 270  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  49491606 aacagcaaaagtgcttacatcaaaaggtataaaatattacatcacaaagatctataataaggaagg 49491671  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 50903193 - 50903264
Alignment:
Q  158 tcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    ||||| |||||||| ||||||||||| ||||||| |  |||| |||||||| | ||||||||||||||||||    
T  50903193 tcaagcaaagaaatactataaaagacctggagagagccagaacccttaacaacgaaagtgcttacatcaaaa 50903264  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 34565961 - 34566033
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    |||||| ||| ||||||||| |||||| |||||||||  |||| ||||| || |||||||||||||| |||||    
T  34565961 atcaagcaaaaaaattctattaaagacctggagagggccagaacccttagcaacaaaagtgcttacaacaaaa 34566033  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 29465232 - 29465299
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacat 224  Q
    |||||| |||||||| ||||||||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  29465232 atcaagcaaagaaatactataaaagacctggagagggctagaacccttaacaacaaaagtgcttacat 29465299  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 26449271 - 26449342
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    |||||| |||||||||| |||||| ||||| ||| ||  |||| |||||||| |||||||||||||| |||||    
T  26449271 atcaagcaaagaaattcaataaaacacttgtagaaggc-agaacccttaacaacaaaagtgcttacaacaaaa 26449342  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 16893428 - 16893306
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaa---------aaggtgcaaaatattacatc 247  Q
    |||||| |||||||| ||||||||||| |||||||||  ||||  ||||||| ||||||||||||||||||         ||||||||||| |||| |||    
T  16893428 atcaagcaaagaaatactataaaagacctggagagggccagaactcttaacaacaaaagtgcttacatcaaaacaaaaagaaggtgcaaaacattatatc 16893329  T
Q  248 acaaagatctataataaggaagg 270  Q
    ||| |||||||||| ||||||||    
T  16893328 acagagatctataacaaggaagg 16893306  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 24347478 - 24347358
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa---------ggtgcaaaatattacatc 247  Q
    |||||| ||| |||||||||||||||  |||||||||    || |||||||| |||||||| |||||||||||         ||||||||| ||||||||    
T  24347478 atcaagcaaataaattctataaaagatctggagagggccgaaacccttaacaacaaaagtgattacatcaaaacaaaaaaatggtgcaaaacattacatc 24347379  T
Q  248 acaaagatctataataaggaa 268  Q
    ||||||| |||||||||||||    
T  24347378 acaaagaactataataaggaa 24347358  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 31529414 - 31529486
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    |||||| ||||||| |||||||||||| ||||||| |  |||| |||||||| ||||||||||||||||||||    
T  31529414 atcaagcaaagaaaatctataaaagacctggagagagccagaacccttaacaacaaaagtgcttacatcaaaa 31529486  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 32843800 - 32843731
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatca 226  Q
    |||||| |||||||| ||||||||||| | || ||||  |||| |||||||| |||||| ||||||||||    
T  32843800 atcaagcaaagaaatgctataaaagacctcgaaagggccagaacccttaacaacaaaagagcttacatca 32843731  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 36150390 - 36150451
Alignment:
Q  168 aaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    |||||| ||||||||  |||||||||  |||| |||||||| |||||||||||||| |||||    
T  36150390 aaattcaataaaagatctggagagggccagaacccttaacaacaaaagtgcttacaacaaaa 36150451  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 9241843 - 9241771
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    |||||| |||||||| ||||||||||| |||||||||  |||| ||||||||  |||||||||||||| ||||    
T  9241843 atcaagcaaagaaatactataaaagacctggagagggccagaacccttaacaataaaagtgcttacataaaaa 9241771  T

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Target: scaffold0753 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 5182 - 5254
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    |||||| ||| |||| ||||||||||| |||||||||  |||| ||||||||  |||||||||||||| ||||    
T  5182 atcaagcaaataaatactataaaagacctggagagggccagaacccttaacaataaaagtgcttacataaaaa 5254  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 8413586 - 8413658
Alignment:
Q  157 atcaagtaaagaaattctataaaagacttggagagggttagaatccttaacagcaaaagtgcttacatcaaaa 229  Q
    |||||| |||||||| ||||||||||| |||||||||  |||  |||||||| ||||   |||||||||||||    
T  8413586 atcaagcaaagaaatactataaaagacctggagagggccagatcccttaacaacaaagaagcttacatcaaaa 8413658  T

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