View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2777_low_14 (Length: 237)
Name: NF2777_low_14
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2777_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 37041229 - 37041016
Alignment:
| Q |
20 |
ctaagctcatatgaattttattatctcacacatatttagggagggaaaccaatgt-----------gactaatttaagtttatcttgtaatcttccatca |
108 |
Q |
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| T |
37041229 |
ctaagctcatatgaattttattatctcacacatatttagggagggaaaccaatgtacagatcacttggttaatttaagtttatcttgtaatcttccatca |
37041130 |
T |
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| Q |
109 |
attttgatgcaaattcccagcagcctaacttcnnnnnnngttcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtct |
208 |
Q |
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| T |
37041129 |
attttgatgcaaattcccagcagcctaacttctttttttgttcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggaggtttggtct |
37041030 |
T |
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| Q |
209 |
ggccccctcctttg |
222 |
Q |
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||||||||||||| |
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| T |
37041029 |
agccccctcctttg |
37041016 |
T |
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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 13138833 - 13138768
Alignment:
| Q |
150 |
tcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggccccc |
215 |
Q |
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| T |
13138833 |
tcaaaacaagttagggatgcctaactttaggtttgttacccattaaggaggtttggtttggccccc |
13138768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 24557533 - 24557468
Alignment:
| Q |
150 |
tcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggccccc |
215 |
Q |
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| T |
24557533 |
tcaaaacaagttagggatgcctaactttaggtttgttacccattaaggaggtttggtttggccccc |
24557468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 13141833 - 13141786
Alignment:
| Q |
150 |
tcaaaacaagttagggatgcctaactttaggtttgttgctcattaagg |
197 |
Q |
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| T |
13141833 |
tcaaaacaagttagggatgcctaactttaggtttgttactcattaagg |
13141786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 14244193 - 14244125
Alignment:
| Q |
154 |
aacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggcc-ccctccttt |
221 |
Q |
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| T |
14244193 |
aacaagttagagatgcttaactttaggtttgttactcattaaggaggtttggtttggccaccctccttt |
14244125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 34239571 - 34239516
Alignment:
| Q |
151 |
caaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggt |
206 |
Q |
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|||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||| |
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| T |
34239571 |
caaaacaagttaggtatgtctaactttaggtttgttactcattaaggaggtttggt |
34239516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 12488509 - 12488546
Alignment:
| Q |
149 |
ttcaaaacaagttagggatgcctaactttaggtttgtt |
186 |
Q |
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|||||||||||||||| |||||||||| |||||||||| |
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| T |
12488509 |
ttcaaaacaagttaggaatgcctaactataggtttgtt |
12488546 |
T |
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