View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2777_low_2 (Length: 506)
Name: NF2777_low_2
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2777_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 39553958 - 39554445
Alignment:
| Q |
1 |
cgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553958 |
cgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttca |
39554057 |
T |
|
| Q |
101 |
tccaagctgcctgcatagtaacgatgataattaaaacactataaataatactactaaatttgtagacatgttgcattgatttttaaatgaataatatttt |
200 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554058 |
tccaagttgcctgcatagtaacaatgataattaaaacactataaataatactaataaatttgtagacatgttgcattgatttttaaatgaataatatttt |
39554157 |
T |
|
| Q |
201 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554158 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39554257 |
T |
|
| Q |
301 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554258 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
39554357 |
T |
|
| Q |
401 |
aagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtgccagtagtaattataggatttttgtaacagaagaac |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39554358 |
aagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtggcagtagtaattataggatttttgtaacagaagaac |
39554445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 201 - 488
Target Start/End: Original strand, 39544844 - 39545131
Alignment:
| Q |
201 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544844 |
acctgagcagcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39544943 |
T |
|
| Q |
301 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544944 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
39545043 |
T |
|
| Q |
401 |
aagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtgccagtagtaattataggatttttgtaacagaagaac |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39545044 |
aagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtggcagtagtaattataggatttttgtaacagaagaac |
39545131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 201 - 488
Target Start/End: Original strand, 39587275 - 39587565
Alignment:
| Q |
201 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
300 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||| |
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|
| T |
39587275 |
acctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcag |
39587374 |
T |
|
| Q |
301 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
400 |
Q |
| |
|
||| |||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||| | || |||||||||||| | || |||||||| |
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| T |
39587375 |
caacagcttcaacaaaatccacaccacggttattgcaaagtagctcaggttcacccatggagttagtaaccatttcaccagcaaatacgtagtaagaaac |
39587474 |
T |
|
| Q |
401 |
aagagcctcagttaaagaatttttcaaacatcccacaa---tgctatggtgggtgccagtagtaattataggatttttgtaacagaagaac |
488 |
Q |
| |
|
|||||| |||| ||| ||||||||||| || ||||||| || ||| | ||||||| ||||||| |||||||||||||| || |||||| |
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| T |
39587475 |
aagagcttcagctaaggaatttttcaagcaccccacaatagtgttattggtggtgccaatagtaatcataggatttttgtagcaaaagaac |
39587565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39543939 - 39544078
Alignment:
| Q |
1 |
cgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
39543939 |
cgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatttca |
39544038 |
T |
|
| Q |
101 |
tccaagctgcctgcatagtaacgatgataattaaaacact |
140 |
Q |
| |
|
|||| | || |||||||||||| |||| ||||||||||| |
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| T |
39544039 |
tccatgttgtctgcatagtaacaatgacgattaaaacact |
39544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 39587071 - 39587182
Alignment:
| Q |
4 |
gctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatcc |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||| |||| ||||||||||| |||||||||||||||| |
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|
| T |
39587071 |
gctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatcc |
39587170 |
T |
|
| Q |
104 |
aagctgcctgca |
115 |
Q |
| |
|
||| |||||||| |
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|
| T |
39587171 |
aagttgcctgca |
39587182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 213 - 391
Target Start/End: Original strand, 17507043 - 17507221
Alignment:
| Q |
213 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaa |
312 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | ||||||||||||| |||||||| |
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|
| T |
17507043 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagttcaacatcagcaacagcttcaa |
17507142 |
T |
|
| Q |
313 |
caaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcata |
391 |
Q |
| |
|
||||||| || |||||||| || ||||| | |||||||||||||| || || | || |||||||| ||||||||||| |
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|
| T |
17507143 |
caaaatcaacaccacgattattacaaagaagctcaggttcacccacagaattggacacaacttcacctgcaaaggcata |
17507221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 357
Target Start/End: Original strand, 17484768 - 17484912
Alignment:
| Q |
213 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaa |
312 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | |||||||||||||| |||||||| |
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|
| T |
17484768 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagctcaacatcagcaacagcttcaa |
17484867 |
T |
|
| Q |
313 |
caaaatccactccacgattgttgcaaagtaactcaggttcaccca |
357 |
Q |
| |
|
||||||| || ||||| || || ||||| | |||||||||||||| |
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|
| T |
17484868 |
caaaatcaacaccacggttattacaaagaatctcaggttcaccca |
17484912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 17503782 - 17503870
Alignment:
| Q |
7 |
atctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccaca |
95 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||| |||||||| |
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|
| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccaca |
17503870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
2 |
gagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactac |
83 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| || |||||||| ||||| ||||| ||||| ||||| |||||||| |
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|
| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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