View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2777_low_5 (Length: 382)
Name: NF2777_low_5
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2777_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 50558754 - 50558380
Alignment:
| Q |
1 |
tgaaatttgccagtcaattttccaaaagatatttgataacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgt |
100 |
Q |
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| T |
50558754 |
tgaaatttgccagtcaattttccaaaagatatttgataacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgt |
50558655 |
T |
|
| Q |
101 |
tcctctctcttgtttagttgaaaatttcagaaaggttctttattacgctttactaaaatgcttatcaaatttcagctttactgcaatacatgcgagaggt |
200 |
Q |
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| T |
50558654 |
tcctctctcttgtttagttgaaaatttcagaaaggttctttattacactttactaaaatgcttatcaaatttcagctttactgcgatacctgcgagaggt |
50558555 |
T |
|
| Q |
201 |
tcttgtgtgatcggcttgtggaaggtgcctgtccaactcctgggtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaa |
300 |
Q |
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| T |
50558554 |
tcttgtgtgatcggcttgtggaaggtacctgtccaactcctgagtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaa |
50558455 |
T |
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| Q |
301 |
tcctacagagttgaagaatcctaggtgcaaggtagcaaccctctccctaaatttttgctctatgtttctgtgctg |
375 |
Q |
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| T |
50558454 |
tcctacagagttgaagaatcctaggtgcaaggtagcaaccctctccctaaatttttgctctatgtttctgtgctg |
50558380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 335
Target Start/End: Complemental strand, 29773236 - 29773068
Alignment:
| Q |
167 |
aaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaactcctgggtgtgagtatggttctgcacgag |
266 |
Q |
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| T |
29773236 |
aaatttcagctttactgcgatacatgcaaaaggttcttagccgatcgacttgtggagggtacctgcccaattccagggtgtgagtatgattctgccagag |
29773137 |
T |
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| Q |
267 |
gtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtag |
335 |
Q |
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| T |
29773136 |
gggatcagtgtgagaactgtggcaaccttctaaatccgacagaattgaagattcccaagtgcaaggtag |
29773068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 50569041 - 50568978
Alignment:
| Q |
16 |
aattttccaaaagata--tttgataacaaatggatctccgagagaacaatggagcaggtgttca |
77 |
Q |
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||||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
50569041 |
aattttcaaaaagataaatttgataacaaatggctatccgagagaaccgtggagcaggtgttca |
50568978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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