View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2777_low_7 (Length: 354)
Name: NF2777_low_7
Description: NF2777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2777_low_7 |
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| [»] scaffold0179 (4 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 2297 - 2397
Alignment:
| Q |
47 |
gttatttaggtaggggagggtccaggtgagaggcaataaaacagtggttagtctctctggttattctctcctgaactggttagcagttaaggttcccggt |
146 |
Q |
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| T |
2297 |
gttatttaggtaggggagggtctaggtgagagccattaaaaaagtggttagtctctctggttattctctcctgaactgattagcagttaaggttcccggt |
2396 |
T |
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| Q |
147 |
t |
147 |
Q |
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| T |
2397 |
t |
2397 |
T |
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Target: scaffold0179; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 2396 - 2451
Alignment:
| Q |
221 |
ttaacaggggaggttacttgcgaaaggtggaccaacatgatttcaaaggacatttt |
276 |
Q |
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| T |
2396 |
ttaacaggggaggttacttgcaaaaggtggaccaacatgttttcaaaggacatttt |
2451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 2456 - 2495
Alignment:
| Q |
305 |
tagaatataagctagcaggatttcatgtttttcgcctatg |
344 |
Q |
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| T |
2456 |
tagaatataagctagcaggatttcatgtttttcgcttatg |
2495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 2484 - 2519
Alignment:
| Q |
273 |
ttttcgcttatggttctgttgtgatcttgtgataga |
308 |
Q |
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| T |
2484 |
ttttcgcttatggttctgttgtgattttgtgataga |
2519 |
T |
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