View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2778_low_1 (Length: 625)

Name: NF2778_low_1
Description: NF2778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2778_low_1
NF2778_low_1
[»] chr8 (12 HSPs)
chr8 (18-613)||(895409-896008)
chr8 (18-238)||(905011-905231)
chr8 (535-596)||(5740788-5740848)
chr8 (536-577)||(41955927-41955967)
chr8 (534-597)||(37392130-37392192)
chr8 (534-577)||(43066627-43066669)
chr8 (536-577)||(3155841-3155881)
chr8 (537-578)||(9048348-9048388)
chr8 (536-597)||(29107993-29108053)
chr8 (534-566)||(26629153-26629185)
chr8 (533-597)||(41639801-41639864)
chr8 (534-566)||(42716316-42716348)
[»] scaffold0428 (1 HSPs)
scaffold0428 (19-190)||(343-514)
[»] chr6 (10 HSPs)
chr6 (19-190)||(33256225-33256396)
chr6 (19-190)||(8295359-8295530)
chr6 (535-625)||(31517154-31517243)
chr6 (35-110)||(6440492-6440567)
chr6 (536-614)||(1196056-1196133)
chr6 (536-578)||(8778904-8778945)
chr6 (535-577)||(9188977-9189018)
chr6 (536-578)||(26391317-26391358)
chr6 (536-597)||(2060635-2060695)
chr6 (534-566)||(31883347-31883379)
[»] scaffold0054 (1 HSPs)
scaffold0054 (535-625)||(31574-31663)
[»] chr4 (4 HSPs)
chr4 (536-625)||(4511823-4511911)
chr4 (534-596)||(46173546-46173607)
chr4 (538-615)||(42169708-42169785)
chr4 (537-577)||(34027894-34027934)
[»] chr3 (5 HSPs)
chr3 (564-625)||(7589202-7589263)
chr3 (536-577)||(37035613-37035654)
chr3 (535-596)||(43169756-43169816)
chr3 (541-597)||(34662020-34662076)
chr3 (537-625)||(48490487-48490574)
[»] chr5 (6 HSPs)
chr5 (35-110)||(34765242-34765317)
chr5 (535-564)||(33743378-33743407)
chr5 (537-577)||(1293119-1293158)
chr5 (536-596)||(4434480-4434539)
chr5 (536-596)||(14206398-14206457)
chr5 (538-566)||(15531995-15532023)
[»] chr7 (8 HSPs)
chr7 (535-625)||(6822507-6822596)
chr7 (535-625)||(30391156-30391245)
chr7 (536-615)||(43213317-43213395)
chr7 (563-625)||(5378662-5378724)
chr7 (536-582)||(23848087-23848132)
chr7 (533-625)||(22330605-22330696)
chr7 (536-576)||(40949934-40949974)
chr7 (534-566)||(43025805-43025837)
[»] chr2 (8 HSPs)
chr2 (536-625)||(42081046-42081134)
chr2 (534-597)||(4138187-4138249)
chr2 (534-577)||(18737907-18737949)
chr2 (535-577)||(1052529-1052570)
chr2 (538-596)||(7121390-7121447)
chr2 (538-596)||(27538919-27538976)
chr2 (537-625)||(37966366-37966453)
chr2 (538-578)||(41868401-41868441)
[»] chr1 (7 HSPs)
chr1 (536-616)||(45272143-45272222)
chr1 (536-615)||(49453489-49453567)
chr1 (536-597)||(49589976-49590036)
chr1 (536-576)||(14983782-14983821)
chr1 (534-566)||(24806265-24806297)
chr1 (537-577)||(25989017-25989056)
chr1 (535-615)||(27687503-27687582)
[»] scaffold0155 (1 HSPs)
scaffold0155 (537-625)||(3245-3332)


Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 895409 - 896008
Alignment:
Q  18 tatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  895409 tatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggagaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttga 895508  T
Q  118 agtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaatgcatgattttttgttcataatgtgcataaaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  895509 agtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaatgcatggttttttgttcataatgtgcataaaag 895608  T
Q  218 ttgagataagtgattatagaaaaagaaagataatttgtgagatgtgtttatttgatttgttgtaatgtaaatggttttgtaacaagtgagtgttgcttat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||   ||||  || | || |||||||||||||||||||||||||||    
T  895609 ttgagataagtgattatagaaaaagaaagataatttgtgagatgtg--tatttaataatttgt--tgaagattgttttgtaacaagtgagtgttgcttat 895704  T
Q  318 tttctgggccattaaggaacgcaattgactttggtgtataaatttaagagtgacagttacactgacctcttactagtacatcatcatttatgt------- 410  Q
    ||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  895705 tttcttgcccattaaggaacgcaattgactttggtgtatatatttaagagtgacagttacactgacctcttactagtacatcatcatttatgttacgtta 895804  T
Q  411 -tacgttatcttttaatgtttctatggtcatgtttctttgatgccggatcagtacacaaagcattcaatgtacataataataatgtaccaaaagtaaggt 509  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  895805 atacgttatcttttcatgtttctatggtcatgtttctttgatgccggatcagtacaaaaagcattcaatgtacataataataatgtaccaaaagttaggt 895904  T
Q  510 gtt-gagaatttttagatgataatgataagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctc 608  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| ||| ||||||||||||||||||||||| |||    
T  895905 gttagagaatttttagatgataatgataaaagaaatgatatttgtacaaccac-tttttgacaactttctctttggtactcacattataccattattctc 896003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 905231 - 905011
Alignment:
Q  18 tatgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttga 117  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  905231 tatgtttgggggaagagtgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgttgttga 905132  T
Q  118 agtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaatgcatgattttttgttcataatgtgcataaaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||| ||||| ||| |||    
T  905131 agtaattgtttggcaaattcaacttgtggaattaaatggctaagtccaggggaaggaaccatagcaatgtatgtttttttattcatgatgtgtatagaag 905032  T
Q  218 ttgagataagtgattatagaa 238  Q
    |||||||||||||||||||||    
T  905031 ttgagataagtgattatagaa 905011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 5740848 - 5740788
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattat 596  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||| |  ||||||||||||    
T  5740848 taagagaaatgatatttgtacaaccact-ttttgacaactttttctctcatactcacattat 5740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 41955927 - 41955967
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  41955927 aagagaaatgatatttgtataacca-ttttttaacaactttt 41955967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 597
Target Start/End: Complemental strand, 37392192 - 37392130
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattata 597  Q
    ||||||||||||||||||||| ||||| |||||| |||||||| ||| |  |||||||||||||    
T  37392192 ataagagaaatgatatttgtacaacca-ttttttgacaactttctctctcatactcacattata 37392130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 577
Target Start/End: Complemental strand, 43066669 - 43066627
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||    
T  43066669 ataagagaaatgatatttgtacaaccact-ttttaacaactttt 43066627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 3155841 - 3155881
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  3155841 aagagaaatgatatttgtacaaccac-tttttaacaactttt 3155881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 578
Target Start/End: Complemental strand, 9048388 - 9048348
Alignment:
Q  537 agagaaatgatatttgtataaccacttttttaacaacttttt 578  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  9048388 agagaaatgatatttgtataacca-ttttctaacaacttttt 9048348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 597
Target Start/End: Original strand, 29107993 - 29108053
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattata 597  Q
    ||||||||||||||||||| || || ||||||||||||||| ||| |  |||||||||||||    
T  29107993 aagagaaatgatatttgtacaatca-ttttttaacaactttctcttttatactcacattata 29108053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 26629185 - 26629153
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttt 566  Q
    ||||||||||||||||||||| |||||||||||    
T  26629185 ataagagaaatgatatttgtacaaccacttttt 26629153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 597
Target Start/End: Complemental strand, 41639864 - 41639801
Alignment:
Q  533 gataagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattata 597  Q
    |||||||||||||||||||||| | ||| |||| |||||| ||||||| |  |||||||||||||    
T  41639864 gataagagaaatgatatttgtacatcca-ttttctaacaattttttctctcatactcacattata 41639801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 42716316 - 42716348
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttt 566  Q
    ||||||||||||||||||||| |||||||||||    
T  42716316 ataagagaaatgatatttgtacaaccacttttt 42716348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 514 - 343
Alignment:
Q  19 atgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttgaa 118  Q
    ||||||||||||||  ||||||||| |  |||||| |||||||| || |||| |||||| ||||||| |||||||| |  | | |||||||||||||| |    
T  514 atgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttgga 415  T
Q  119 gtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaatgcatg 190  Q
    ||||| |||| ||||| |||||||||||||| |||||||| | |||||| ||||||||||||||||||||||    
T  414 gtaatagttttgcaaactcaacttgtggaatcaaatggctcaatccaggtgaaggaaccatagcaatgcatg 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 33256396 - 33256225
Alignment:
Q  19 atgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttgaa 118  Q
    ||||||||||||||  ||||||||| |  |||||| |||||||| || |||| |||||| ||||||| |||||||| |  | | |||||||||||||| |    
T  33256396 atgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttgga 33256297  T
Q  119 gtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaatgcatg 190  Q
    ||||| |||| ||||| |||||||||||||| |||||||| | |||||| ||||||||||||||||||||||    
T  33256296 gtaatagttttgcaaactcaacttgtggaatcaaatggctcaatccaggtgaaggaaccatagcaatgcatg 33256225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 8295359 - 8295530
Alignment:
Q  19 atgtttggtggaagattgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttgaa 118  Q
    ||||||||||||||| |||||||||    |||||| |||||||| || |||| |||||| ||||||| |||||||| |  | |||||||||||| ||| |    
T  8295359 atgtttggtggaagagtgttcaagatggattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtattcattgtgattttgga 8295458  T
Q  119 gtaattgtttggcaaattcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaatgcatg 190  Q
    ||||| |||| ||||| |||||| ||||||| |||||||| | |||||| ||||||||||||||||||||||    
T  8295459 gtaatagtttagcaaactcaactagtggaatcaaatggctcaatccaggtgaaggaaccatagcaatgcatg 8295530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 625
Target Start/End: Complemental strand, 31517243 - 31517154
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||| |  ||||||||||||||  |||| ||||||||||| || |||||    
T  31517243 taagagaaatgatatttgtacaaccact-ttttgacaactttttctctcatactcacattatactcttattctctctcttcctttttctct 31517154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 6440567 - 6440492
Alignment:
Q  35 tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg 110  Q
    ||||||| ||||| | |||||||||||| ||| ||| || |||||||| || ||||||||||||||| ||||||||    
T  6440567 tgttcaatacttgctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtg 6440492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 614
Target Start/End: Original strand, 1196056 - 1196133
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctctt 614  Q
    ||||||||||||||||||| || ||| ||||| |||||||| ||| |  ||||||||||||||  |||| |||||||||    
T  1196056 aagagaaatgatatttgtacaatcac-tttttgacaactttctctctaatactcacattatactcttattctctctctt 1196133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 8778945 - 8778904
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaacttttt 578  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  8778945 aagagaaatgatatttgtacaacca-ttttttaacaacttttt 8778904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 9189018 - 9188977
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  9189018 taagagaaatgatatttgtacaacca-ttttttaacaactttt 9188977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 26391358 - 26391317
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaacttttt 578  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  26391358 aagagaaatgatatttgtacaacca-ttttttaacaacttttt 26391317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 597
Target Start/End: Complemental strand, 2060695 - 2060635
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattata 597  Q
    ||||||||||||||||| ||||||| |||| | |||||||||||| |  |||||||||||||    
T  2060695 aagagaaatgatatttgaataacca-ttttatgacaactttttctctcatactcacattata 2060635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 31883379 - 31883347
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttt 566  Q
    ||||||||||||||||||||| |||||||||||    
T  31883379 ataagagaaatgatatttgtacaaccacttttt 31883347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 535 - 625
Target Start/End: Complemental strand, 31663 - 31574
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    |||||||||||||||||||| ||||| |||||| |||||||| ||| |  ||||||||||||||  |||| ||||||||||| || |||||    
T  31663 taagagaaatgatatttgtacaacca-ttttttgacaactttctctctcatactcacattatactcttattctctctcttcctttttctct 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 4511823 - 4511911
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    ||||||||||||||||||||||||| |||| | |||||||| ||| |  |||||||||||||   |||| ||||||||||| ||||||||    
T  4511823 aagagaaatgatatttgtataacca-ttttatgacaactttctctctcatactcacattatattcttattctctctcttcctttctctct 4511911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 596
Target Start/End: Original strand, 46173546 - 46173607
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattat 596  Q
    ||||||||||||||||||||| |||||| ||| | |||||||| ||| | |||||||||||||    
T  46173546 ataagagaaatgatatttgtacaaccac-tttgtgacaactttctctctcgtactcacattat 46173607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 615
Target Start/End: Complemental strand, 42169785 - 42169708
Alignment:
Q  538 gagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttc 615  Q
    ||||||||||| ||||| |||||||||| |||||| ||| ||| |  |||||||||||| |  |||| ||||||||||    
T  42169785 gagaaatgatagttgtacaaccacttttataacaattttatctctcatactcacattatcctcttattctctctcttc 42169708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 34027894 - 34027934
Alignment:
Q  537 agagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    |||||||||||||||||| ||| | ||||||||||||||||    
T  34027894 agagaaatgatatttgtacaacaatttttttaacaactttt 34027934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 625
Target Start/End: Complemental strand, 7589263 - 7589202
Alignment:
Q  564 ttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    ||||||||||||||| | |  ||||||||||||||| |||||||||||||||| ||||||||    
T  7589263 ttttaacaactttttatctcatactcacattatacccttatcctctctcttcctttctctct 7589202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 37035613 - 37035654
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    |||| |||||||||||||||||||| |||||| |||||||||    
T  37035613 aagataaatgatatttgtataaccatttttttgacaactttt 37035654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 43169816 - 43169756
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattat 596  Q
    |||||||||||||||||||| ||||| |||| | |||||||||||| |  ||||||||||||    
T  43169816 taagagaaatgatatttgtacaacca-ttttgtgacaactttttctctcatactcacattat 43169756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 597
Target Start/End: Original strand, 34662020 - 34662076
Alignment:
Q  541 aaatgatatttgtataaccacttttttaacaactttttctatggtactcacattata 597  Q
    |||||||||||||||||||  ||||||| ||||||| ||| |  |||||||||||||    
T  34662020 aaatgatatttgtataacccattttttagcaactttatctctcatactcacattata 34662076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 625
Target Start/End: Complemental strand, 48490574 - 48490487
Alignment:
Q  537 agagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    |||||||||||||||||| |||||||||| | |||||||| ||| |  ||||||||||||    |||| ||||||||||| || |||||    
T  48490574 agagaaatgatatttgtacaaccacttttgt-acaactttctctctcatactcacattatctttttattctctctcttcctttttctct 48490487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 34765242 - 34765317
Alignment:
Q  35 tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg 110  Q
    ||||||||  ||| ||||||||| |||| ||||||  ||||||||||| || ||||||||||||||| ||||||||    
T  34765242 tgttcaaggtttgatgcattgaaagagtgagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtg 34765317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 564
Target Start/End: Complemental strand, 33743407 - 33743378
Alignment:
Q  535 taagagaaatgatatttgtataaccacttt 564  Q
    ||||||||||||||||||||||||||||||    
T  33743407 taagagaaatgatatttgtataaccacttt 33743378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 1293158 - 1293119
Alignment:
Q  537 agagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  1293158 agagaaatgatatttgtacaacca-ttttttaacaactttt 1293119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 4434480 - 4434539
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattat 596  Q
    ||||||||||||||||||| ||||| |||||| |||| ||||||| |  ||||||||||||    
T  4434480 aagagaaatgatatttgtacaacca-ttttttgacaattttttctctcatactcacattat 4434539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 14206398 - 14206457
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattat 596  Q
    ||||||||||||||||||| ||||| |||||| |||||||| ||| |  ||||||||||||    
T  14206398 aagagaaatgatatttgtacaacca-ttttttgacaactttctctctcatactcacattat 14206457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 566
Target Start/End: Complemental strand, 15532023 - 15531995
Alignment:
Q  538 gagaaatgatatttgtataaccacttttt 566  Q
    |||||||||||||||||||||||||||||    
T  15532023 gagaaatgatatttgtataaccacttttt 15531995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 625
Target Start/End: Complemental strand, 6822596 - 6822507
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||| |  ||||||||||||    |||| ||||||||||| || |||||    
T  6822596 taagagaaatgatatttgtacaacca-ttttctaacaactttttctctcatactcacattatcttcttattctctctcttcctttttctct 6822507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 625
Target Start/End: Original strand, 30391156 - 30391245
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    |||||||||||||||||||||||| | |||| | |||||||||||| |  |||||||||||||   |||| ||||||||||| || |||||    
T  30391156 taagagaaatgatatttgtataacta-ttttattacaactttttctcttatactcacattatattcttattctctctcttcctttttctct 30391245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 615
Target Start/End: Original strand, 43213317 - 43213395
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttc 615  Q
    ||||||||||||||||||| |||||| ||| |||||| ||| ||| |  ||||||||||||||  |||| ||||||||||    
T  43213317 aagagaaatgatatttgtacaaccac-tttctaacaattttctctctcatactcacattatactcttattctctctcttc 43213395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 625
Target Start/End: Original strand, 5378662 - 5378724
Alignment:
Q  563 tttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    ||||| |||||||| ||| |  |||||||||||||||||||| ||||||||||| || |||||    
T  5378662 tttttgacaactttctctctcatactcacattataccattattctctctcttcctttttctct 5378724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 23848087 - 23848132
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctat 582  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||    
T  23848087 aagagaaatgatatttgtataatca-ttttttaacaactttctctat 23848132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 625
Target Start/End: Complemental strand, 22330696 - 22330605
Alignment:
Q  533 gataagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    |||||||||||||||||||||| |||||| ||| | |||||||| ||| |  |||||||||||| |  |||| || |||||||| || |||||    
T  22330696 gataagagaaatgatatttgtacaaccac-tttgtgacaactttctctctcatactcacattattctcttattctttctcttcctttttctct 22330605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 576
Target Start/End: Complemental strand, 40949974 - 40949934
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaacttt 576  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  40949974 aagagaaatgatatttgtataactatttttttgacaacttt 40949934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 43025805 - 43025837
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttt 566  Q
    ||||||||||||||||||||| |||||||||||    
T  43025805 ataagagaaatgatatttgtacaaccacttttt 43025837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 42081046 - 42081134
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    ||||||||||||||||||| | |||| ||||| |||||||| ||| |  ||||||||||| ||| |||| ||||||||||| || |||||    
T  42081046 aagagaaatgatatttgtacagccac-tttttgacaactttctctctcatactcacattacacctttattctctctcttcctttttctct 42081134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 597
Target Start/End: Complemental strand, 4138249 - 4138187
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattata 597  Q
    ||||||||||||||||||||||||| | |||| |||||||||| ||| |  |||||||||||||    
T  4138249 ataagagaaatgatatttgtataacta-ttttctaacaactttctctctcatactcacattata 4138187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 577
Target Start/End: Complemental strand, 18737949 - 18737907
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  18737949 ataagagaaatgatatttgtatatcca-ttttttaacaactttt 18737907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 1052570 - 1052529
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  1052570 taagagaaatgatatttgtacaacca-ttttttaacaactttt 1052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 596
Target Start/End: Original strand, 7121390 - 7121447
Alignment:
Q  538 gagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattat 596  Q
    ||||||||||||||||||||||| |||| |||||||||| ||| |  ||||||||||||    
T  7121390 gagaaatgatatttgtataacca-ttttgtaacaactttctctctcatactcacattat 7121447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 596
Target Start/End: Complemental strand, 27538976 - 27538919
Alignment:
Q  538 gagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattat 596  Q
    ||||||||||||||||| ||||| |||| || ||||||| |||||| ||||||||||||    
T  27538976 gagaaatgatatttgtacaaccatttttgta-caactttctctatgatactcacattat 27538919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 625
Target Start/End: Original strand, 37966366 - 37966453
Alignment:
Q  537 agagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
    |||||||||||||||||| ||||| ||| | | ||||||||||| |  ||||||||| ||    ||||||||||||||||||| |||||    
T  37966366 agagaaatgatatttgtacaaccaatttgtga-caactttttctctcatactcacatgatggtcttatcctctctcttcccttttctct 37966453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 578
Target Start/End: Complemental strand, 41868441 - 41868401
Alignment:
Q  538 gagaaatgatatttgtataaccacttttttaacaacttttt 578  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  41868441 gagaaatgatatttgtacaatcatttttttaacaacttttt 41868401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 616
Target Start/End: Complemental strand, 45272222 - 45272143
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcc 616  Q
    ||||||||||||||||||| ||||||| |||| |||||||| ||| |  |||||||||||| |  |||| |||||||||||    
T  45272222 aagagaaatgatatttgtacaaccact-ttttgacaactttctctctcatactcacattatccttttattctctctcttcc 45272143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 615
Target Start/End: Original strand, 49453489 - 49453567
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttc 615  Q
    ||||||||||||||||||| |||||| ||| | |||||||| ||| |  ||||||||||||||  |||| ||||||||||    
T  49453489 aagagaaatgatatttgtacaaccac-tttgtgacaactttctctctcatactcacattatacttttattctctctcttc 49453567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 597
Target Start/End: Complemental strand, 49590036 - 49589976
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattata 597  Q
    ||||||||||||||||||| ||||||||| || |||||||||| | |  |||||||||||||    
T  49590036 aagagaaatgatatttgtacaaccactttatt-acaactttttatctcatactcacattata 49589976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 576
Target Start/End: Original strand, 14983782 - 14983821
Alignment:
Q  536 aagagaaatgatatttgtataaccacttttttaacaacttt 576  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  14983782 aagagaaatgatatttgtacaaccac-tttttaacaacttt 14983821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 24806297 - 24806265
Alignment:
Q  534 ataagagaaatgatatttgtataaccacttttt 566  Q
    ||||||||||||||||||| |||||||||||||    
T  24806297 ataagagaaatgatatttgaataaccacttttt 24806265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 25989056 - 25989017
Alignment:
Q  537 agagaaatgatatttgtataaccacttttttaacaactttt 577  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  25989056 agagaaatgatatttgtacaacca-ttttttaacaactttt 25989017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 615
Target Start/End: Complemental strand, 27687582 - 27687503
Alignment:
Q  535 taagagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttc 615  Q
    |||||||||||||||||||| ||||| |||| | |||||||| ||| |  |||||||||||||   |||| ||||||||||    
T  27687582 taagagaaatgatatttgtacaacca-ttttgtgacaactttatctctcatactcacattatatttttattctctctcttc 27687503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 625
Target Start/End: Complemental strand, 3332 - 3245
Alignment:
Q  537 agagaaatgatatttgtataaccacttttttaacaactttttctatggtactcacattataccattatcctctctcttcccttctctct 625  Q
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T  3332 agagaaatgatatttgtacaaccac-tttctcacaactttctctctcatactcacatcatacttttattctctctcttcctttttctct 3245  T

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