View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2778_low_2 (Length: 435)

Name: NF2778_low_2
Description: NF2778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2778_low_2
NF2778_low_2
[»] chr2 (7 HSPs)
chr2 (215-416)||(14538293-14538512)
chr2 (103-213)||(10148572-10148682)
chr2 (102-213)||(10147786-10147897)
chr2 (114-220)||(16871513-16871618)
chr2 (103-214)||(39062858-39062969)
chr2 (103-213)||(34229033-34229143)
chr2 (215-271)||(14553813-14553869)
[»] chr5 (6 HSPs)
chr5 (39-213)||(43379379-43379553)
chr5 (103-213)||(43378572-43378682)
chr5 (103-214)||(11336275-11336386)
chr5 (39-213)||(11343688-11343858)
chr5 (114-213)||(3636365-3636464)
chr5 (114-220)||(33529729-33529834)
[»] chr6 (3 HSPs)
chr6 (39-143)||(13208156-13208260)
chr6 (103-213)||(13207346-13207456)
chr6 (102-159)||(10838146-10838204)
[»] chr7 (11 HSPs)
chr7 (103-213)||(42252829-42252942)
chr7 (103-213)||(42253035-42253144)
chr7 (114-213)||(48204046-48204145)
chr7 (113-213)||(46294641-46294741)
chr7 (103-214)||(35752325-35752435)
chr7 (103-215)||(35753023-35753139)
chr7 (103-213)||(18947286-18947396)
chr7 (103-213)||(18948212-18948322)
chr7 (133-207)||(46295636-46295710)
chr7 (103-164)||(43492978-43493039)
chr7 (177-213)||(25675779-25675815)
[»] chr8 (11 HSPs)
chr8 (93-213)||(42578709-42578829)
chr8 (103-208)||(42503031-42503136)
chr8 (103-215)||(42503880-42503992)
chr8 (103-213)||(41889323-41889434)
chr8 (114-215)||(39308666-39308767)
chr8 (114-207)||(39309638-39309731)
chr8 (133-213)||(6462604-6462684)
chr8 (113-208)||(28584353-28584448)
chr8 (111-164)||(3572124-3572177)
chr8 (102-154)||(38443754-38443806)
chr8 (151-219)||(43235425-43235493)
[»] chr4 (5 HSPs)
chr4 (92-214)||(39310395-39310518)
chr4 (92-208)||(24484788-24484905)
chr4 (113-213)||(9483632-9483732)
chr4 (102-159)||(32158853-32158911)
chr4 (103-213)||(39311330-39311440)
[»] scaffold0151 (1 HSPs)
scaffold0151 (103-161)||(20792-20850)
[»] chr3 (5 HSPs)
chr3 (103-164)||(17057152-17057213)
chr3 (115-215)||(34936713-34936813)
chr3 (114-213)||(34329358-34329457)
chr3 (124-213)||(55444560-55444649)
chr3 (173-213)||(40613828-40613868)
[»] chr1 (1 HSPs)
chr1 (103-213)||(15668237-15668348)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 215 - 416
Target Start/End: Original strand, 14538293 - 14538512
Alignment:
Q  215 attttgaccagacatgaattgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctcccttta 314  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538293 attttgaccagacatgaatcgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctcccttta 14538392  T
Q  315 tggcgagcacagctgttgtgtcagtcagtcta------------------gcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattt 396  Q
    ||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538393 tggcgagcacagctgttgtgtcagtcagtctagagaaaatctgactgtctgcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattt 14538492  T
Q  397 tgtgcagaaatagcatttcc 416  Q
    ||||||||||||||||||||    
T  14538493 tgtgcagaaatagcatttcc 14538512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 10148572 - 10148682
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||||||||| ||||||||| | |||||| |||||||||| | |||||||||||||| |||   || |||||| ||||||||| |||| |||||||||      
T  10148572 ttttccaaactttttaatctcaacccttgattttatttttaccacatgtcacacatccaaggaatgaaatggggtaaatggaggcttcctaaatggagtg 10148671  T
Q  203 aagatgaactc 213  Q
    ||| |||||||    
T  10148672 aagttgaactc 10148682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 10147897 - 10147786
Alignment:
Q  102 attttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagc 201  Q
    ||||||||||| ||||||||| | | |||| |||||||||||| |||||||||||||| ||    || |||||||||||||||| |||| ||| |||||     
T  10147897 attttccaaactttttaatctcaacgcttgattttatttttgccacatgtcacacatccaacgaatgaaatgggataaatggaggcttcctaactggagt 10147798  T
Q  202 aaagatgaactc 213  Q
     ||| |||||||    
T  10147797 gaagttgaactc 10147786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 16871513 - 16871618
Alignment:
Q  114 ttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||| |||||||  ||||| ||| || ||||||||  |||||| ||| || |||||||||||| ||  |||| ||||||||||||||||||||||    
T  16871513 ttttaatctcagcccttcgttttagttt-gccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactc 16871611  T
Q  214 gattttg 220  Q
    | |||||    
T  16871612 gtttttg 16871618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 39062858 - 39062969
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    ||||||||||||||||||| ||||| ||| ||||||| |||| |||||||| ||||||| ||  || ||| || ||||| || |   |||||||||| ||    
T  39062858 ttttccaaaccttttaatcctagccattgattttattgttgccacatgtcatacatctatgacttgaaattgggtaaattgaacaaacataaatggaaca 39062957  T
Q  203 aagatgaactcg 214  Q
    |||||| |||||    
T  39062958 aagatggactcg 39062969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 34229033 - 34229143
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||| |||| |||||||||| |||| ||| |||||||||| | |||||||||||||||| ||  |  |||||| ||||| |||   || |||||||||||    
T  34229033 tttttcaaagcttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagca 34229132  T
Q  203 aagatgaactc 213  Q
    |||||| ||||    
T  34229133 aagatggactc 34229143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 14553813 - 14553869
Alignment:
Q  215 attttgaccagacatgaattgccgagttctttcattttatattttggagaatgttta 271  Q
    ||||||||||| ||||  |  ||| ||||||||||||| ||||||||||||||||||    
T  14553813 attttgaccagtcatggttcaccgtgttctttcattttttattttggagaatgttta 14553869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 43379379 - 43379553
Alignment:
Q  39 ggtcgtgtgaactttgaaccagaagagtgtgcgtgtggcttctttttatttactaaacaattgattttccaaaccttttaatcttagcccttgcttttat 138  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  43379379 ggtcgtgtgaactttgaaccagaagagtgtgcgcgtggcttctttttatttactaaacaattgattttccaaaccttttaatcccaacccttgcttttat 43379478  T
Q  139 ttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43379479 ttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 43379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 43378682 - 43378572
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||| ||||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  43378682 tttttcaaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagca 43378583  T
Q  203 aagatgaactc 213  Q
    |||||||||||    
T  43378582 aagatgaactc 43378572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 11336386 - 11336275
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    ||||||||||||||||||| || ||||||||||||| ||||  |||||||||||| |||| |||||||  |||  |||||||| |||| ||||||||  |    
T  11336386 ttttccaaaccttttaatcctaacccttgcttttatgtttgtcacatgtcacacacctaaaagctggaccggggaaaatggaggcttcctaaatggaaga 11336287  T
Q  203 aagatgaactcg 214  Q
    ||||||||||||    
T  11336286 aagatgaactcg 11336275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 11343688 - 11343858
Alignment:
Q  39 ggtcgtgtgaactttgaaccagaagagt--gtgcgtgtggcttctttttatttactaaacaattgatttt-ccaaaccttttaatcttagcccttgcttt 135  Q
    ||||||||||| ||||||| ||||||||  |||||||||||||||||||  ||| |||||||||| |||| |||||||| ||||||  |   ||||||||    
T  11343688 ggtcgtgtgaagtttgaactagaagagtaagtgcgtgtggcttcttttt--ttattaaacaattgctttttccaaacctattaatcccaattcttgcttt 11343785  T
Q  136 tatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||| ||||||||| ||| ||||||      |||| |||||||||  |||||||||||||  |||||||||||    
T  11343786 tatttttgccacatgtcacccatataagag-----ttggggtaaatggaggtttcataaatggagggaagatgaactc 11343858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 3636365 - 3636464
Alignment:
Q  114 ttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||| | |||||  ||||| |||| | ||||||||  |||||| ||| || || |||| ||||||||||||| ||||||||||||||||||||||    
T  3636365 ttttaatctcaacccttaattttaatttttccacatgtcagtcatctatgagttgaaaagggaaaaatggagccttcttaaatggagcaaagatgaactc 3636464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 33529834 - 33529729
Alignment:
Q  114 ttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||| |||||||  ||||| ||| || ||||||||  |||||| ||| || |||||||||||| ||  |||| ||||||||||||||||||||||    
T  33529834 ttttaatctcagcccttcgttttagttt-gccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactc 33529736  T
Q  214 gattttg 220  Q
    | |||||    
T  33529735 gtttttg 33529729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 13208156 - 13208260
Alignment:
Q  39 ggtcgtgtgaactttgaaccagaagagtgtgcgtgtggcttctttttatttactaaacaattgattttccaaaccttttaatcttagcccttgcttttat 138  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||  | |||||||||||||    
T  13208156 ggtcgtgtgaactttgaaccagaagagtgtgcgcgtggcttctttttatttactaaacaattaattttccaaaccttttaatcccaacccttgcttttat 13208255  T
Q  139 ttttg 143  Q
    |||||    
T  13208256 ttttg 13208260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 13207456 - 13207346
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||| |||| |||||||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |    
T  13207456 tttttcaaatcttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctggaatggggtaaatgtagccttcgtaaatggagta 13207357  T
Q  203 aagatgaactc 213  Q
    |||||||||||    
T  13207356 aagatgaactc 13207346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 10838204 - 10838146
Alignment:
Q  102 attttccaaaccttttaatcttagcccttgcttttattt-ttgctacatgtcacacatc 159  Q
    |||||| |||| |||||||||||||||||| |||||||| |||| ||||||||||||||    
T  10838204 attttctaaactttttaatcttagcccttggttttatttgttgccacatgtcacacatc 10838146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 42252942 - 42252829
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctac---atgtcacacatctaagagctggaatgggataaatggagccttcataaatgga 199  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||   ||||||| ||||||| |||||||||| | ||||||||| |||||||||||||    
T  42252942 ttttccaaaccttttaatctcagcctttgcttttatttttgccaccatatgtcacgcatctaaaagctggaatgtggtaaatggaggcttcataaatgga 42252843  T
Q  200 gcaaagatgaactc 213  Q
    ||||||||||||||    
T  42252842 gcaaagatgaactc 42252829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 42253035 - 42253144
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||| |||| |||||||||| |||||||| |||||||||||  | |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  42253035 tttttcaaatcttttaatctcagcccttgtttttatttttgaca-atgtcacacatctaagagttggaatgggataaattgaggcttcataaatggagca 42253133  T
Q  203 aagatgaactc 213  Q
    || ||||||||    
T  42253134 aacatgaactc 42253144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 48204046 - 48204145
Alignment:
Q  114 ttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||| | |||||  ||||| |||||| ||||||||   ||||| ||| || || |||| ||||||||||||| ||||| ||||||||||||||||    
T  48204046 ttttaatctcaacccttaattttaattttgccacatgtcagttatctatgaggtgaaaagggaaaaatggagccttcttaaattgagcaaagatgaactc 48204145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 46294741 - 46294641
Alignment:
Q  113 cttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaact 212  Q
    ||||||||| || |||||| ||||||| |||  | |||||||||||||| ||  |  || |||||||||||||||||   |||||||||||||||| |||    
T  46294741 cttttaatcctaacccttgattttattattgtcatatgtcacacatctatgaagtaaaaagggataaatggagcctttgcaaatggagcaaagatgcact 46294642  T
Q  213 c 213  Q
    |    
T  46294641 c 46294641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 35752435 - 35752325
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||| ||||||||||||||  | || ||| |||||||||||| |||||||| ||||||| ||  || |||||||||||| ||||   |  ||||||||||    
T  35752435 tttttcaaaccttttaatcacaaccattgattttatttttgccacatgtcatacatctatga-ttgaaatgggataaattgagcaaaccaaaatggagca 35752337  T
Q  203 aagatgaactcg 214  Q
    || |||||||||    
T  35752336 aacatgaactcg 35752325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 35753023 - 35753139
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatggg----ataaatggagccttcataaatgg 198  Q
    ||||||||| |||||||||  |||| ||| |||||||||||| |||||||| ||||||| ||  || ||||||    |||||| |||    |||||||||    
T  35753023 ttttccaaatcttttaatcacagccattgattttatttttgccacatgtcatacatctatgacgtgaaatggggtaaataaattgagtaaacataaatgg 35753122  T
Q  199 agcaaagatgaactcga 215  Q
    |||||||||| ||||||    
T  35753123 agcaaagatggactcga 35753139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 18947396 - 18947286
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    ||||| || |||| |||||| | || ||| |||||| ||||| |||||||  ||||||| ||  || ||||| |||||||||| || | |||||||||||    
T  18947396 ttttctaagccttctaatctcaaccattggttttatatttgccacatgtccaacatctatgaagtgaaatggtataaatggaggctccctaaatggagca 18947297  T
Q  203 aagatgaactc 213  Q
    |||||| ||||    
T  18947296 aagatgcactc 18947286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 18948212 - 18948322
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    ||||| || ||||||||||| |||| ||  |||||| ||||| |||||||| ||||| | ||  || ||||| ||||||| || || | |||||||||||    
T  18948212 ttttctaagccttttaatctcagccattaattttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatgaaggctccctaaatggagca 18948311  T
Q  203 aagatgaactc 213  Q
    |||||| ||||    
T  18948312 aagatgcactc 18948322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 46295636 - 46295710
Alignment:
Q  133 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 207  Q
    |||| |||| || ||||||||||||||||  |  || || |||||||||||||| || |||||||||||||||||    
T  46295636 ttttgttttagccacatgtcacacatctataaaatgaaaagggataaatggagcattgataaatggagcaaagat 46295710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 43492978 - 43493039
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaaga 164  Q
    |||||||||||||||||||| | || ||| ||| |||||||| |  ||||||||||||||||    
T  43492978 ttttccaaaccttttaatctcaaccgttggtttcatttttgccatgtgtcacacatctaaga 43493039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 25675779 - 25675815
Alignment:
Q  177 taaatggagccttcataaatggagcaaagatgaactc 213  Q
    |||||||||||  ||||||||||||||||||||||||    
T  25675779 taaatggagccaacataaatggagcaaagatgaactc 25675815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 42578829 - 42578709
Alignment:
Q  93 aaacaattgattttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcat 192  Q
    |||||| || ||||||||| |||||||||| |||| ||| |||||||||||| |||||||| ||||||| ||  || |||||| ||||| ||||   |||    
T  42578829 aaacaagtgcttttccaaatcttttaatctcagccattgattttatttttgccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacat 42578730  T
Q  193 aaatggagcaaagatgaactc 213  Q
    |||||||||||||||| ||||    
T  42578729 aaatggagcaaagatggactc 42578709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 42503136 - 42503031
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||||||||||||||||||  |||| ||| |||||||||| |||||||||||||||||| ||  || |||||| ||||| |||    | |||||||||||    
T  42503136 ttttccaaaccttttaatcacagccattgattttattttttctacatgtcacacatctatgatatgaaatggggtaaattgaggaaacttaaatggagca 42503037  T
Q  203 aagatg 208  Q
    ||||||    
T  42503036 aagatg 42503031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 42503880 - 42503992
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||||||||||||||||||  |||| ||  |||||||||| | |||||||||||||||| ||  ||||||||| ||||| |||    | |||||||||||    
T  42503880 ttttccaaaccttttaatcacagccattaattttattttttccacatgtcacacatctatgatatggaatggggtaaattgaggaagcctaaatggagca 42503979  T
Q  203 aagatgaactcga 215  Q
    |||||| ||||||    
T  42503980 aagatggactcga 42503992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 41889434 - 41889323
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgctttt-atttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagc 201  Q
    |||||||| ||||||||||| |||||||| |||| |||||||| |||||||||||||| ||    || || ||  |||||||||||||| |||||||| |    
T  41889434 ttttccaacccttttaatctcagcccttgattttcatttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggaac 41889335  T
Q  202 aaagatgaactc 213  Q
    ||||||| ||||    
T  41889334 aaagatggactc 41889323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 39308767 - 39308666
Alignment:
Q  114 ttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||  |||||||  ||||| |||||| ||||||||  |||||| ||| || || |||||||||||||  ||| ||||||||||||||||| ||||    
T  39308767 ttttaatcccagcccttcattttagttttgccacatgtcagtcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatggactc 39308668  T
Q  214 ga 215  Q
    ||    
T  39308667 ga 39308666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 39309638 - 39309731
Alignment:
Q  114 ttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 207  Q
    ||||||||| |||||||  ||||  |||||| ||||||||  |||||| ||| || || |||||||||||||  ||| ||||||||||||||||    
T  39309638 ttttaatctcagcccttcatttttgttttgccacatgtcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagat 39309731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 6462604 - 6462684
Alignment:
Q  133 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    |||||||||||| |||||||| ||||||| ||  || |||||| ||||| ||||   ||||||||||||||||||| ||||    
T  6462604 ttttatttttgccacatgtcatacatctaggacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactc 6462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 28584353 - 28584448
Alignment:
Q  113 cttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatg 208  Q
    ||||||||||  ||||||| |||||||||||| || ||||||| |||||||||    |  |||||||||||||   || |||||||||||||||||    
T  28584353 cttttaatctcggcccttggttttatttttgccacgtgtcacatatctaagaggcaaacagggataaatggaggtctcttaaatggagcaaagatg 28584448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 3572124 - 3572177
Alignment:
Q  111 accttttaatcttagcccttgcttttatttttgctacatgtcacacatctaaga 164  Q
    ||||||||||| |||  |||  |||||||||||| |||||||||||||||||||    
T  3572124 accttttaatcctagtactttgttttatttttgccacatgtcacacatctaaga 3572177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 38443806 - 38443754
Alignment:
Q  102 attttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcac 154  Q
    ||||||||||||||||||||  || | ||| |||||||||| |||||||||||    
T  38443806 attttccaaaccttttaatcacagtcattgattttattttttctacatgtcac 38443754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 43235493 - 43235425
Alignment:
Q  151 tcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcgatttt 219  Q
    ||||||||||| ||  || || ||||||||||||| |||  ||||||||||||||||| |||| |||||    
T  43235493 tcacacatctatgaagtgaaaagggataaatggaggcttggtaaatggagcaaagatgcactccatttt 43235425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 39310518 - 39310395
Alignment:
Q  92 taaacaattg-attttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttc 190  Q
    |||||||||| ||||| |||| |||||||||| |||| ||| |||||||||| | |||||||| |||||||  |  || |||||||||||| |||   ||    
T  39310518 taaacaattgcatttttcaaagcttttaatctcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatc 39310419  T
Q  191 ataaatggagcaaagatgaactcg 214  Q
     ||||||||||||||||| |||||    
T  39310418 ttaaatggagcaaagatggactcg 39310395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 24484905 - 24484788
Alignment:
Q  92 taaacaattg-attttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttc 190  Q
    |||||||||| ||||| |||| |||||||||| |||| ||| |||||||||| | ||||||||||||||||  |  || ||| |||||||| |||   ||    
T  24484905 taaacaattgcatttttcaaagcttttaatctcagccattggttttattttttccacatgtcacacatctataacttgaaataggataaattgaggaatc 24484806  T
Q  191 ataaatggagcaaagatg 208  Q
     |||||||||||||||||    
T  24484805 ttaaatggagcaaagatg 24484788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 9483632 - 9483732
Alignment:
Q  113 cttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaact 212  Q
    ||||||||| || |||||  ||||||| | || |||||||||||||||| ||  || || |||||||||||| ||||   |||||||||||||||| |||    
T  9483632 cttttaatcctaacccttaattttattatggccacatgtcacacatctatgaagtgaaaagggataaatggaacctttgcaaatggagcaaagatgcact 9483731  T
Q  213 c 213  Q
    |    
T  9483732 c 9483732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 32158911 - 32158853
Alignment:
Q  102 attttccaaaccttttaatcttagcccttgcttttat-ttttgctacatgtcacacatc 159  Q
    |||||| ||||||||||||||  ||||||| |||||  |||||||||||||||||||||    
T  32158911 attttctaaaccttttaatctctgcccttggttttaacttttgctacatgtcacacatc 32158853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 39311330 - 39311440
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 202  Q
    |||| |||| |||||||||| |||  ||| |||||||||| | |||||||||||||||| ||  |  |||||| ||||| |||   || |||||||||||    
T  39311330 tttttcaaagcttttaatctcagcaattgattttattttttccacatgtcacacatctatgacttaaaatggggtaaattgagaaatcttaaatggagca 39311429  T
Q  203 aagatgaactc 213  Q
    |||||| ||||    
T  39311430 aagatggactc 39311440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 20850 - 20792
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatcta 161  Q
    |||||||||||||||||||| |||| ||| |||||||||| | ||||||||||||||||    
T  20850 ttttccaaaccttttaatctcagccattggttttatttttaccacatgtcacacatcta 20792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 17057213 - 17057152
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgcttttatttttgctacatgtcacacatctaaga 164  Q
    |||||||||||||||||||| | || ||| ||| |||||||| || ||||||||||||||||    
T  17057213 ttttccaaaccttttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaaga 17057152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 34936813 - 34936713
Alignment:
Q  115 tttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcg 214  Q
    |||||||  |||| ||| |||||||||||| |||||||||| ||||| ||  || || |||||||||||||   |  ||||||||||||||||| |||||    
T  34936813 tttaatccaagccattggttttatttttgccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatgcactcg 34936714  T
Q  215 a 215  Q
    |    
T  34936713 a 34936713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 34329457 - 34329358
Alignment:
Q  114 ttttaatcttagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||| | ||||||  ||| ||||||| ||||| || ||||||| |   ||||||||||||||| ||||   | ||||||||||||||||||||||    
T  34329457 ttttaatctcaacccttgaatttgtttttgccacatgacatacatctatgtcttggaatgggataaattgagcacgcctaaatggagcaaagatgaactc 34329358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 55444560 - 55444649
Alignment:
Q  124 agcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    |||||||| |||||  ||||| |||||||||||||| |  |  || || |||||||||||||| ||| |||||| |||||||||| ||||    
T  55444560 agcccttgtttttacatttgccacatgtcacacatcaataaagtgaaaagggataaatggagcattcttaaatgaagcaaagatggactc 55444649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 40613828 - 40613868
Alignment:
Q  173 gggataaatggagccttcataaatggagcaaagatgaactc 213  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  40613828 gggataaatggaggcttgctaaatggagcaaagatgaactc 40613868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 15668237 - 15668348
Alignment:
Q  103 ttttccaaaccttttaatcttagcccttgctttt-atttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagc 201  Q
    |||||||| ||||||||||  | | |||| |||| |||||||| |||||||||||||| ||    || || ||  |||||||||||||| ||||||||||    
T  15668237 ttttccaacccttttaatcccatcacttgattttcatttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggagc 15668336  T
Q  202 aaagatgaactc 213  Q
    ||||||| ||||    
T  15668337 aaagatggactc 15668348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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