View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2778_low_3 (Length: 431)
Name: NF2778_low_3
Description: NF2778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2778_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 26031523 - 26031942
Alignment:
| Q |
9 |
gcagagagggacaagtgtcattcccaaatcaaccaacccaaataggatcaaagagaatgtggttgtcttcaattgggaacttccagataatgacttcaac |
108 |
Q |
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| T |
26031523 |
gcagagagggacaagtgtcattcccaaatcaaccaacccaaataggatcaaagagaatgtggttgtcttcaattgggaacttccagataatgacttcaac |
26031622 |
T |
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| Q |
109 |
aaacttagcaaaataccagatcaggtagctcacaagcatgggtcgaaatagtttccgatttgataaatagatctttaaaattgttaatttcatccaaaat |
208 |
Q |
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| T |
26031623 |
aaacttagcaaaataccagatcaggtagctcacaagcattggtcgaaatag-ttccgatttgataaatagatctttaaaattgttaatttcatccaaaat |
26031721 |
T |
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| Q |
209 |
ggtccatccgttgacttctactattggagctatgatgtggcacgttaacgggatatactacattgcatgttgatctcacattaaggtcatccaactagtg |
308 |
Q |
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||||||||||||||||||||||||||||||||||| |||| || ||||| |||| |||||||||||||| ||| ||| || | ||||||| | ||||| |
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| T |
26031722 |
ggtccatccgttgacttctactattggagctatgacgtggaacattaaccaaatatgctacattgcatgttcatcccacgttgacgtcatcccattagtg |
26031821 |
T |
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| Q |
309 |
cctatgaaattcaggtcttcttaaggataaatttgtcggtaattattgataaatcagtccgtaagaaacctaaacttcatagacagacgtcaattcgcaa |
408 |
Q |
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|||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||| |
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| T |
26031822 |
cctatgaaattcaggtcttcttggggacaaatttgtcagtaattattggtaaatcagtcggtaagaaacctaaacttgatagac--acgtcaattcgcaa |
26031919 |
T |
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| Q |
409 |
tgtggggacatttatgtgggatc |
431 |
Q |
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| T |
26031920 |
tttgatgacatttatgtgggatc |
26031942 |
T |
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