View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2778_low_4 (Length: 382)
Name: NF2778_low_4
Description: NF2778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2778_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 4928280 - 4927920
Alignment:
| Q |
18 |
ttcttcttaattaggatcatatttttcttaattaggatcatgagcttcatttcttcttcatatatatgtttcctccaagcacaacttgttgaagatttct |
117 |
Q |
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| T |
4928280 |
ttcttcttaattaggatcatatttttcttaattaggatcatgagtttcatttcttcttcatatatatgtttcctccaagcacagcttgttgaagatttct |
4928181 |
T |
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| Q |
118 |
tggtcaattcataacttctgtactttcattaaagagaaaatttcactacttgattttttcttctgaagtttatgtataatttctttctaatcttatcaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4928180 |
tggtcaattcataacttctgtactttcattaaagagaaaatttcactacttgattttttcttctgaagtttctgtataatttctttctaatcttatcaag |
4928081 |
T |
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| Q |
218 |
atgtgtttaatttgtgtatgatataaatgatgagttgcactgtcttttgaataatcctttcttctcatggatgcggtgcagtcatatcttctactcatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
4928080 |
atgtgtttaatttgtgtatgatataaatgatgagttgcactgtcttttgaataatcctttctcctcatggatgcggtgcggtcatatcttctactcatgt |
4927981 |
T |
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| Q |
318 |
tttcttgta-aaaataaaacttagggataccttgttcatat-atcagaaacttcatctcac |
376 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4927980 |
tttcttgtaaaaaataaaacttagggataccttgttcatataatcagaaacttcatctcac |
4927920 |
T |
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