View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2778_low_6 (Length: 255)
Name: NF2778_low_6
Description: NF2778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2778_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 39545331 - 39545097
Alignment:
| Q |
17 |
caatgtcacccttctaccttattcactaaactagaggtgaaacattctcataatctaatcgctaaaatgtgtattggaaaagtagaactcaccgtgaata |
116 |
Q |
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| T |
39545331 |
caatgtcacccttctaccttattcactaaactagaggtgaaacattctcctaatctagtccccaaaatgtgtattggaaaaggagaattcaccgtgaaag |
39545232 |
T |
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| Q |
117 |
cgaccaacgaagaaatagtggcagctgcactaccaatgcaagagcattggcttccattatcaaaccttgacctaattcttccccctgttgatgttagtgt |
216 |
Q |
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| T |
39545231 |
ttaccaacaaagaaatagtggctgctgctctgccaatgcaagagcactggcttccactatcaaaccttgatttaattcttcccccagttgatgttggtgt |
39545132 |
T |
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| Q |
217 |
gttcttttgttacaataatcctataattactactg |
251 |
Q |
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| T |
39545131 |
gttcttctgttacaaaaatcctataattactactg |
39545097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 39554609 - 39554411
Alignment:
| Q |
53 |
gtgaaacattctcataatctaatcgctaaaatgtgtattggaaaagtagaactcaccgtgaatacgaccaacgaagaaatagtggcagctgcactaccaa |
152 |
Q |
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| T |
39554609 |
gtgaaacattctcctaatctagtccccaaaatgtgtattggaaaaggagaattcaccgtgaaagttaccaacaaagaaatagtggctgctgctctgccaa |
39554510 |
T |
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| Q |
153 |
tgcaagagcattggcttccattatcaaaccttgacctaattcttccccctgttgatgttagtgtgttcttttgttacaataatcctataattactactg |
251 |
Q |
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| T |
39554509 |
tgcaagagcactggcttccactatcaaaccttgatttaattcttcccccagttgatgttggtgtgttcttctgttacaaaaatcctataattactactg |
39554411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 255
Target Start/End: Complemental strand, 39587713 - 39587527
Alignment:
| Q |
69 |
atctaatcgctaaaatgtgtattggaaaagtagaactcaccgtgaatacgaccaacgaagaaatagtggcagctgcactaccaatgcaagagcattggct |
168 |
Q |
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|||||||| |||||||| |||||||||||||||| ||| || |||| || ||||| || |||| |||||| | | |||||||||| ||| |||| |
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| T |
39587713 |
atctaatcactaaaatgaatattggaaaagtagaattcagtgtcaatattactaacgaggaggtagttgcagctaccaaagcaatgcaagaacataggct |
39587614 |
T |
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| Q |
169 |
tccattatcaaaccttgacctaattcttccccctgttgatgttagtgtgttcttttgttacaataatcctataattactactggcac |
255 |
Q |
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| T |
39587613 |
agcactatcaaatcttgatttactacttccccctgttagtattggtgtgttcttttgctacaaaaatcctatgattactattggcac |
39587527 |
T |
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