View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2778_low_8 (Length: 244)

Name: NF2778_low_8
Description: NF2778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2778_low_8
NF2778_low_8
[»] chr4 (42 HSPs)
chr4 (1-150)||(11358455-11358604)
chr4 (151-219)||(24509391-24509459)
chr4 (72-117)||(5979411-5979456)
chr4 (151-219)||(21025601-21025669)
chr4 (24-117)||(11839797-11839891)
chr4 (59-120)||(8170764-8170825)
chr4 (44-116)||(11840018-11840091)
chr4 (1-117)||(12034388-12034505)
chr4 (142-219)||(14443189-14443266)
chr4 (64-117)||(29223396-29223449)
chr4 (152-219)||(26909375-26909442)
chr4 (62-117)||(40317747-40317802)
chr4 (62-117)||(40327821-40327876)
chr4 (73-120)||(42375213-42375260)
chr4 (152-214)||(2401611-2401673)
chr4 (33-102)||(17381548-17381618)
chr4 (24-108)||(46804784-46804869)
chr4 (145-214)||(51255740-51255809)
chr4 (142-214)||(3078916-3078988)
chr4 (151-219)||(10994156-10994223)
chr4 (62-117)||(8755947-8756002)
chr4 (62-117)||(13834395-13834450)
chr4 (33-119)||(51226088-51226175)
chr4 (151-214)||(56557733-56557796)
chr4 (141-219)||(48722059-48722136)
chr4 (74-119)||(4215149-4215193)
chr4 (149-214)||(7037493-7037557)
chr4 (146-211)||(32012891-32012956)
chr4 (73-150)||(46217158-46217235)
chr4 (152-213)||(48649519-48649580)
chr4 (79-116)||(51234447-51234484)
chr4 (73-117)||(3534206-3534250)
chr4 (151-219)||(5249868-5249936)
chr4 (151-219)||(5932767-5932835)
chr4 (151-219)||(34116544-34116611)
chr4 (61-101)||(35075837-35075877)
chr4 (151-219)||(37297049-37297116)
chr4 (147-219)||(38160777-38160848)
chr4 (151-219)||(45082981-45083048)
chr4 (44-105)||(45615779-45615842)
chr4 (150-214)||(51224847-51224910)
chr4 (151-219)||(55609169-55609236)
[»] chr2 (31 HSPs)
chr2 (148-219)||(10833649-10833720)
chr2 (143-219)||(9048405-9048481)
chr2 (151-219)||(13711370-13711438)
chr2 (33-117)||(15301570-15301654)
chr2 (40-123)||(1517779-1517863)
chr2 (47-116)||(12676433-12676503)
chr2 (62-120)||(29926868-29926926)
chr2 (33-117)||(20167575-20167660)
chr2 (153-219)||(14233722-14233788)
chr2 (150-219)||(28245727-28245796)
chr2 (143-212)||(34134781-34134850)
chr2 (151-219)||(6336252-6336320)
chr2 (72-116)||(23359422-23359466)
chr2 (142-214)||(38821357-38821429)
chr2 (151-214)||(31296854-31296916)
chr2 (150-219)||(6999071-6999140)
chr2 (152-217)||(7502433-7502498)
chr2 (88-117)||(8001988-8002017)
chr2 (151-212)||(30413737-30413797)
chr2 (91-120)||(35150444-35150473)
chr2 (151-219)||(2308326-2308393)
chr2 (41-116)||(5707920-5707996)
chr2 (150-214)||(6170629-6170693)
chr2 (73-117)||(6788469-6788513)
chr2 (151-215)||(13765400-13765464)
chr2 (151-219)||(25881544-25881612)
chr2 (151-219)||(27490734-27490801)
chr2 (48-103)||(34549283-34549339)
chr2 (151-219)||(35589390-35589458)
chr2 (151-219)||(36132974-36133041)
chr2 (151-211)||(37731211-37731271)
[»] chr6 (23 HSPs)
chr6 (1-117)||(10219543-10219660)
chr6 (149-219)||(10335548-10335618)
chr6 (48-123)||(515969-516045)
chr6 (1-117)||(10067704-10067821)
chr6 (44-122)||(19134312-19134390)
chr6 (47-117)||(33806702-33806773)
chr6 (150-219)||(6531186-6531255)
chr6 (75-116)||(9436561-9436602)
chr6 (154-219)||(10826504-10826569)
chr6 (79-120)||(24834940-24834981)
chr6 (141-185)||(29376752-29376796)
chr6 (151-218)||(6164194-6164261)
chr6 (147-214)||(25924873-25924939)
chr6 (62-113)||(29619603-29619654)
chr6 (59-117)||(23887738-23887796)
chr6 (150-215)||(8747168-8747233)
chr6 (64-117)||(10219781-10219834)
chr6 (146-211)||(33712315-33712380)
chr6 (50-101)||(10349764-10349816)
chr6 (75-119)||(11589963-11590007)
chr6 (151-219)||(17551382-17551450)
chr6 (151-219)||(20822871-20822939)
chr6 (73-117)||(25085068-25085112)
[»] chr7 (32 HSPs)
chr7 (151-219)||(35600671-35600739)
chr7 (151-219)||(36703875-36703943)
chr7 (151-219)||(17945068-17945135)
chr7 (151-219)||(45815259-45815327)
chr7 (150-219)||(38656534-38656603)
chr7 (159-219)||(33776367-33776427)
chr7 (33-101)||(39608353-39608422)
chr7 (47-116)||(10228752-10228822)
chr7 (151-219)||(15564911-15564979)
chr7 (1-117)||(21401757-21401873)
chr7 (73-121)||(46719996-46720044)
chr7 (151-214)||(37899323-37899386)
chr7 (30-117)||(5362279-5362367)
chr7 (33-112)||(14669485-14669565)
chr7 (73-117)||(21401957-21402001)
chr7 (151-219)||(44184562-44184630)
chr7 (151-214)||(12007194-12007257)
chr7 (24-102)||(24127183-24127262)
chr7 (143-214)||(33050175-33050245)
chr7 (148-219)||(34108858-34108929)
chr7 (151-214)||(47448826-47448889)
chr7 (149-219)||(31329356-31329424)
chr7 (152-185)||(22816951-22816984)
chr7 (149-214)||(32777715-32777780)
chr7 (34-122)||(32996480-32996569)
chr7 (151-219)||(13152593-13152660)
chr7 (52-115)||(14669290-14669354)
chr7 (151-219)||(19426580-19426647)
chr7 (49-101)||(24352357-24352409)
chr7 (151-219)||(33180713-33180781)
chr7 (151-215)||(41590527-41590591)
chr7 (151-219)||(46260095-46260163)
[»] chr3 (53 HSPs)
chr3 (149-219)||(536279-536349)
chr3 (151-219)||(48152289-48152357)
chr3 (13-117)||(14984424-14984529)
chr3 (151-219)||(41670585-41670653)
chr3 (73-120)||(38989871-38989918)
chr3 (154-212)||(29030817-29030875)
chr3 (24-117)||(1183200-1183294)
chr3 (59-116)||(22235252-22235309)
chr3 (33-117)||(30843787-30843872)
chr3 (151-219)||(49196696-49196763)
chr3 (43-117)||(621842-621917)
chr3 (73-117)||(1183031-1183075)
chr3 (150-214)||(29573364-29573428)
chr3 (151-219)||(35272027-35272094)
chr3 (73-117)||(43838806-43838850)
chr3 (155-219)||(45693750-45693814)
chr3 (151-219)||(46019462-46019530)
chr3 (151-219)||(48405410-48405478)
chr3 (151-219)||(52963319-52963387)
chr3 (30-105)||(53705947-53706023)
chr3 (151-214)||(10811135-10811198)
chr3 (47-121)||(22235462-22235537)
chr3 (47-121)||(32536466-32536541)
chr3 (41-119)||(47944329-47944408)
chr3 (150-188)||(1109368-1109406)
chr3 (149-219)||(6178429-6178498)
chr3 (75-145)||(37289341-37289411)
chr3 (33-106)||(40618995-40619069)
chr3 (47-116)||(48048034-48048104)
chr3 (47-99)||(10566103-10566156)
chr3 (149-214)||(11327106-11327170)
chr3 (150-219)||(14207261-14207330)
chr3 (150-219)||(14215009-14215078)
chr3 (150-219)||(16969570-16969638)
chr3 (151-212)||(21196124-21196185)
chr3 (151-184)||(23770769-23770802)
chr3 (62-117)||(26019826-26019878)
chr3 (142-219)||(31446158-31446235)
chr3 (151-184)||(37035552-37035585)
chr3 (62-107)||(40618941-40618986)
chr3 (149-214)||(41877686-41877750)
chr3 (40-116)||(45681167-45681244)
chr3 (150-219)||(48352995-48353064)
chr3 (150-219)||(48944714-48944782)
chr3 (151-212)||(50559222-50559283)
chr3 (150-219)||(51464276-51464344)
chr3 (30-117)||(14194906-14194994)
chr3 (151-219)||(16479632-16479699)
chr3 (151-211)||(32362933-32362993)
chr3 (151-219)||(37894246-37894314)
chr3 (150-214)||(37927213-37927277)
chr3 (151-219)||(46473128-46473195)
chr3 (151-219)||(55399999-55400067)
[»] chr1 (47 HSPs)
chr1 (151-219)||(49660179-49660247)
chr1 (151-219)||(43560204-43560272)
chr1 (151-214)||(33070602-33070665)
chr1 (62-116)||(6541255-6541309)
chr1 (151-219)||(37516524-37516592)
chr1 (151-212)||(11037183-11037242)
chr1 (45-102)||(35684887-35684945)
chr1 (154-219)||(39712381-39712446)
chr1 (30-117)||(30050577-30050665)
chr1 (180-219)||(46758398-46758437)
chr1 (40-117)||(27463890-27463968)
chr1 (1-102)||(34177283-34177385)
chr1 (149-219)||(49020407-49020477)
chr1 (59-116)||(34177469-34177526)
chr1 (151-219)||(9566964-9567032)
chr1 (45-116)||(33747319-33747391)
chr1 (73-117)||(35607224-35607268)
chr1 (62-117)||(3728099-3728154)
chr1 (62-117)||(5529853-5529908)
chr1 (62-117)||(32743313-32743368)
chr1 (59-106)||(39330194-39330241)
chr1 (62-117)||(45679721-45679776)
chr1 (151-214)||(48983676-48983739)
chr1 (141-184)||(50239191-50239234)
chr1 (33-102)||(9890696-9890766)
chr1 (149-219)||(23645409-23645478)
chr1 (75-116)||(6450088-6450129)
chr1 (146-219)||(10890049-10890122)
chr1 (151-212)||(11947795-11947856)
chr1 (151-212)||(15083061-15083121)
chr1 (150-219)||(47642610-47642679)
chr1 (151-219)||(649768-649836)
chr1 (173-217)||(6340747-6340791)
chr1 (75-119)||(6727977-6728021)
chr1 (148-184)||(13355096-13355132)
chr1 (151-219)||(13489662-13489730)
chr1 (151-219)||(15705065-15705133)
chr1 (151-219)||(21433404-21433472)
chr1 (151-219)||(24806225-24806293)
chr1 (34-117)||(27900658-27900742)
chr1 (56-116)||(27900887-27900947)
chr1 (151-219)||(34254354-34254422)
chr1 (73-117)||(34826875-34826919)
chr1 (151-219)||(37619544-37619611)
chr1 (151-219)||(48858823-48858891)
chr1 (150-214)||(51436780-51436844)
chr1 (151-219)||(52362482-52362550)
[»] scaffold0416 (1 HSPs)
scaffold0416 (149-219)||(6856-6926)
[»] chr8 (41 HSPs)
chr8 (13-150)||(21145585-21145725)
chr8 (158-219)||(39692302-39692363)
chr8 (149-219)||(21273714-21273783)
chr8 (149-214)||(5600995-5601060)
chr8 (149-214)||(5639560-5639625)
chr8 (44-119)||(6393831-6393907)
chr8 (150-218)||(12284274-12284342)
chr8 (30-117)||(21602159-21602247)
chr8 (75-121)||(10028429-10028475)
chr8 (149-219)||(25987790-25987860)
chr8 (154-219)||(9549202-9549267)
chr8 (59-116)||(21145434-21145491)
chr8 (146-219)||(34018803-34018876)
chr8 (142-219)||(34718106-34718183)
chr8 (151-219)||(5277707-5277775)
chr8 (79-119)||(10708430-10708470)
chr8 (150-214)||(22960425-22960489)
chr8 (81-117)||(29911559-29911595)
chr8 (151-214)||(3946240-3946303)
chr8 (47-117)||(14523926-14523997)
chr8 (148-219)||(26026893-26026964)
chr8 (40-105)||(7603938-7604004)
chr8 (30-95)||(21215933-21215999)
chr8 (148-214)||(29509263-29509328)
chr8 (141-219)||(37449429-37449506)
chr8 (150-219)||(12735015-12735084)
chr8 (150-219)||(25830249-25830318)
chr8 (150-219)||(31249528-31249596)
chr8 (34-101)||(4586789-4586857)
chr8 (151-219)||(5742661-5742728)
chr8 (151-219)||(7598708-7598776)
chr8 (151-219)||(7678732-7678799)
chr8 (47-99)||(8340307-8340359)
chr8 (142-214)||(13106468-13106540)
chr8 (45-117)||(21600621-21600693)
chr8 (73-121)||(24018134-24018182)
chr8 (151-219)||(33100472-33100540)
chr8 (151-211)||(34435748-34435808)
chr8 (151-219)||(37784378-37784445)
chr8 (151-219)||(43285966-43286034)
chr8 (142-214)||(43587632-43587703)
[»] chr5 (35 HSPs)
chr5 (30-108)||(6217635-6217714)
chr5 (148-219)||(9742383-9742454)
chr5 (47-123)||(7756649-7756726)
chr5 (43-114)||(32270632-32270704)
chr5 (33-117)||(16127088-16127173)
chr5 (149-214)||(21922153-21922218)
chr5 (27-123)||(22579481-22579578)
chr5 (60-117)||(27001182-27001239)
chr5 (73-142)||(42525264-42525333)
chr5 (73-117)||(8206106-8206150)
chr5 (148-219)||(6446521-6446592)
chr5 (151-214)||(8920078-8920141)
chr5 (33-111)||(17676566-17676645)
chr5 (151-214)||(18660759-18660821)
chr5 (151-214)||(18695318-18695381)
chr5 (140-219)||(19127113-19127191)
chr5 (148-219)||(28306136-28306206)
chr5 (149-219)||(6517710-6517780)
chr5 (149-219)||(22098253-22098323)
chr5 (49-99)||(24147606-24147656)
chr5 (146-219)||(4719645-4719718)
chr5 (79-120)||(9572505-9572546)
chr5 (150-219)||(12779610-12779678)
chr5 (45-105)||(14468819-14468880)
chr5 (151-219)||(1274358-1274425)
chr5 (60-120)||(2707756-2707816)
chr5 (150-214)||(3263517-3263580)
chr5 (151-219)||(13089785-13089853)
chr5 (151-215)||(19981993-19982057)
chr5 (147-219)||(21155983-21156055)
chr5 (33-116)||(29686676-29686760)
chr5 (151-219)||(35075579-35075647)
chr5 (62-102)||(37853268-37853308)
chr5 (60-116)||(39194866-39194922)
chr5 (151-219)||(43214062-43214130)
[»] scaffold0041 (1 HSPs)
scaffold0041 (47-120)||(37363-37437)
[»] scaffold0532 (1 HSPs)
scaffold0532 (149-219)||(10962-11032)
[»] scaffold0050 (1 HSPs)
scaffold0050 (30-102)||(81330-81403)
[»] scaffold0687 (1 HSPs)
scaffold0687 (40-105)||(1622-1688)
[»] scaffold0102 (1 HSPs)
scaffold0102 (62-104)||(27111-27153)
[»] scaffold0329 (1 HSPs)
scaffold0329 (45-116)||(6246-6318)
[»] scaffold0003 (2 HSPs)
scaffold0003 (59-123)||(89251-89314)
scaffold0003 (48-123)||(109249-109324)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 11358455 - 11358604
Alignment:
Q  1 tcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaattcaaaataatccatgattgtgcacttcgttagtcaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11358455 tcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaattcaaaataatccatgattgtgcacttcgttagtcaaaatag 11358554  T
Q  101 tctctgacgttaaaatagtccctgaacgccgacattaactatttttatat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11358555 tctctgacgttaaaatagtccctgaacgccgacattaactatttttatat 11358604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 24509459 - 24509391
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||    
T  24509459 gagaaatgatattttgacaaccattttgtgacaatctatgtgacaactttatctctcatactcacatta 24509391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 5979411 - 5979456
Alignment:
Q  72 atgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5979411 atgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 5979456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 21025601 - 21025669
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| |||||||||| |||||| ||||    
T  21025601 gagaaatgatattttgacaaccattttgtgacaatttatgtgacaactttatctctcttactcacatta 21025669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 11839797 - 11839891
Alignment:
Q  24 acgagcagccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||| ||||||||| ||| |||||| |||||||||| ||||||| |||  |||||||||| ||||||||||||||||||  |||| ||||||||    
T  11839797 acgagtagccacaatagtccctcaatatatcgaaatttcaaaatagtcccagattgtgcacctcgttagtcaaaatagtccttgacattaaaata 11839891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 8170764 - 8170825
Alignment:
Q  59 ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    ||||||||| ||  ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  8170764 ttcaaaatagtctttgattgtgcactttgttagtcaaaatagtctctgacgtcaaaatagtc 8170825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 11840091 - 11840018
Alignment:
Q  44 ctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||||| |||| ||||||||||| |||||||||||||    
T  11840091 ctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgttaatcaaaatagtccctgacgttaaaat 11840018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 12034388 - 12034505
Alignment:
Q  1 tcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaata 99  Q
    ||||||| ||| |||||||| | ||||| || |||||| ||| ||||||||||| ||||| ||||||| ||  |||||||  |||| |||||||||||||    
T  12034388 tcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgttagtcaaaata 12034487  T
Q  100 gtctctgacgttaaaata 117  Q
    |||||||||  |||||||    
T  12034488 gtctctgacactaaaata 12034505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 14443189 - 14443266
Alignment:
Q  142 tttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||  |||| ||||||  |||||| | |||||||||||| ||||||||||| ||||||    
T  14443189 tttttatatgagaaatgatatttgaacaatcattttttgacaacttttgtgacaattttctctctcatacttatatta 14443266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 29223449 - 29223396
Alignment:
Q  64 aataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||| |||||||    
T  29223449 aataatccatgattgtgcactatgttagtcaaaatagtctctaacgctaaaata 29223396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 26909375 - 26909442
Alignment:
Q  152 agaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||| |||||| ||||| |||||||| || ||||||||||||||||| ||||    
T  26909375 agaaatgatattttatcaactattttgtgacaatctatgtgagaactttatctctcatactcacatta 26909442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 40317802 - 40317747
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| ||| ||||||| ||||| |||| ||||||||||||||||||||||||||    
T  40317802 aaaatagtccttgattgtacactttgttaatcaaaatagtctctgacgttaaaata 40317747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 40327876 - 40327821
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| ||| ||||||| ||||| |||| ||||||||||||||||||||||||||    
T  40327876 aaaatagtccttgattgtacactttgttaatcaaaatagtctctgacgttaaaata 40327821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 42375260 - 42375213
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  42375260 tgattctgcacttcgttagttaaaatagtctctgacattaaaatagtc 42375213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 2401611 - 2401673
Alignment:
Q  152 agaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||  ||| |||||||| |||||| | |||||||| |||||||||||||||||    
T  2401611 agaaatgatatttgaacatccattttgtgacaacttttgtgacaactttatctctcatactca 2401673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 17381618 - 17381548
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtc 102  Q
    |||||| ||| ||||||||||| |||||| |||||| ||| ||||||||||||| |||| |||||||||||    
T  17381618 cacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatagtc 17381548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 46804784 - 46804869
Alignment:
Q  24 acgagcagccacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgac 108  Q
    ||||||||  ||||| ||| ||||||||||| |||||  |||||| ||  ||||||| ||||| ||||||||||||||||||||||    
T  46804784 acgagcagtgacaatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtctctgac 46804869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 51255740 - 51255809
Alignment:
Q  145 ttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||| ||||||||||||||  |||||||||||  |||||| | |||||||| ||| |||||||||||||    
T  51255740 ttataagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 51255809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 3078988 - 3078916
Alignment:
Q  142 tttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||| |||||||||||||||||  |||| |||||||  ||||| | |||||||| ||| |||||||||||||    
T  3078988 tttttttatgagaaatgatatttgtacaatcattttgtaacaacttttgtgacaactttctctctcatactca 3078916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 10994223 - 10994156
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||| ||||| || | |||||| ||||||||||||||||| ||||    
T  10994223 gagaaatgatatttgtacaaccattttgtgacaatct-tttgacaactttatctctcatactcacatta 10994156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 8756002 - 8755947
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||  ||||| |||||||||||| |||||||||||||| || ||||||||    
T  8756002 aaaataatcattgattatgcacttcgttaatcaaaatagtctctaacattaaaata 8755947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 13834395 - 13834450
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| ||| ||||||||||||| ||||||||||||||||| | || ||||||||    
T  13834395 aaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacattaaaata 13834450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 51226175 - 51226088
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagt 119  Q
    |||||| |||| ||||||||||||||||| |||||  | | ||||||||||||  |||||||||||||||   ||| |||||||||||    
T  51226175 cacaatagtctttcaatgtatcgaaattctaaaattgttcttgattgtgcactctgttagtcaaaatagttattgaagttaaaatagt 51226088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 56557733 - 56557796
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  ||||| |||||  |||||| | |||||||||||| |||||||||||||    
T  56557733 gagaaatgatatttgaacaacaattttatgacaacttttgtgacaattttctctctcatactca 56557796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 48722059 - 48722136
Alignment:
Q  141 atttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||| | ||||||||||||||  ||| ||||||||| |||| || | |||||||||| ||||||||||||| ||||    
T  48722059 atttttaaaagagaaatgatatttgtacatccattttgcaacaa-ctttttgacaattttctctctcatactcacatta 48722136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 4215193 - 4215149
Alignment:
Q  74 gattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagt 119  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||    
T  4215193 gattgtgcacttcgttaatcaaaatagtctct-acattaaaatagt 4215149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 7037557 - 7037493
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||  ||||||| |||| |||||| | ||| |||||||| |||||||||||||    
T  7037557 atgagaaatgatatttgtacaaccaatttgtgacaacttttgt-acaattttctctctcatactca 7037493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 32012891 - 32012956
Alignment:
Q  146 tatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatac 211  Q
    |||||||||||||||||||  ||||||| |||  |||||| | |||||||| ||| ||||||||||    
T  32012891 tatatgagaaatgatatttgaacaaccaatttttgacaacttttgtgacaactttctctctcatac 32012956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 46217235 - 46217158
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccctgaacgccgacattaactatttttatat 150  Q
    |||||||| | |||||||||||||||||||| | |||| |||||| || || || || |||||||||| |||| ||||    
T  46217235 tgattgtgtatttcgttagtcaaaatagtctttaacgtcaaaataatctctcaatgctgacattaactcttttcatat 46217158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 48649519 - 48649580
Alignment:
Q  152 agaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactc 213  Q
    |||| ||||||||| |||||||||||   ||||| | |||||||||||| ||||||||||||    
T  48649519 agaagtgatatttttacaaccattttctaacaacttttgtgacaattttctctctcatactc 48649580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 51234484 - 51234447
Alignment:
Q  79 tgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  51234484 tgcatttcgttagtcaaaatagtctctgatgttaaaat 51234447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 3534250 - 3534206
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||| |||||||||||||||||| || || |||||||||    
T  3534250 tgattgtgcaattcgttagtcaaaatagtttcagatgttaaaata 3534206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 5249868 - 5249936
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||   ||||||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  5249868 gagaaatgatatttgtgcaaccattttatgacaacatttgtgacaactttctctctcatactcacatta 5249936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 5932835 - 5932767
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  5932835 gagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatactcacatta 5932767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 34116611 - 34116544
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||| |||||| | | |||||||||| ||||||||||||| ||||    
T  34116611 gagaaatgatatttgtacaaccactttgtgacaactttt-tgacaattttctctctcatactcacatta 34116544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 35075877 - 35075837
Alignment:
Q  61 caaaataatccatgattgtgcacttcgttagtcaaaatagt 101  Q
    ||||||||| | |||||||||||||||||||||||| ||||    
T  35075877 caaaataattcttgattgtgcacttcgttagtcaaactagt 35075837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 37297049 - 37297116
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||   ||||| | |||||||||||| ||||||||||||| ||||    
T  37297049 gagaaatgatatttgaacaaccatttttt-acaacttttgtgacaattttctctctcatactcacatta 37297116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 38160848 - 38160777
Alignment:
Q  147 atatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||| |||||||||||  ||||| |||||| ||||| | || |||||| ||| ||||||||||||||||||    
T  38160848 atatgaaaaatgatatttatacaactattttgtgacaatc-atttgacaactttctctctcatactcatatta 38160777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 45082981 - 45083048
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | ||||| |||||| ||||||||||||| ||||    
T  45082981 gagaaatgatatttgaacaaccattttt-gacaacttttgtgataattttctctctcatactcaaatta 45083048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 45615842 - 45615779
Alignment:
Q  44 ctcaatgtatcgaaattcaaaataatccatgattgtg--cacttcgttagtcaaaatagtctct 105  Q
    |||||||| ||||||||  ||||| ||| ||||||||  ||||| |||||||||||||||||||    
T  45615842 ctcaatgtttcgaaattttaaatagtccttgattgtgtgcactttgttagtcaaaatagtctct 45615779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 51224910 - 51224847
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||  ||||||||||||| |||| || | |||||| ||| |||||||||||||    
T  51224910 tgagaaatgatatttgtacaaccattttgctacaa-ctttttgacaactttctctctcatactca 51224847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 55609236 - 55609169
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||||||||  ||||| | |||||||| ||| ||||||||||||| ||||    
T  55609236 gagaaatgatatttgtacaaccattttg-tacaacttttgtgacaactttctctctcatactcacatta 55609169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 10833720 - 10833649
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  10833720 tatgagaaatgatattttgacaaccattttgtgacaatctatgtgacaattttatctctcatactcacatta 10833649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 9048481 - 9048405
Alignment:
Q  143 ttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||||||||||| || || |||||| |||| ||||||||||||| ||| ||||    
T  9048481 ttttatatgagaaatgatattttgacaaccattttgtgataatctatgtaacaactttatctctcatattcacatta 9048405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 13711438 - 13711370
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||| ||| ||||    
T  13711438 gagaaatgatattttgacacccattttgtgacaacctacgtgacaactttatctctcatattcacatta 13711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 15301654 - 15301570
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| ||||||||||||||||||||| ||||||||||  |||||||||| ||  | ||||||||||||||||||| ||||||||    
T  15301654 cacaatcgtctctcaatgtatcgaaatttcaaaataatctctgattgtgcattttct-agtcaaaatagtctctgacattaaaata 15301570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 1517863 - 1517779
Alignment:
Q  40 gtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccct 123  Q
    |||||||||||||||||||||| |||||| || |||||||| |||||| |||||||| |||||   ||||||||||||| |||||    
T  1517863 gtctctcaatgtatcgaaattctaaaatagtctatgattgtacacttcattagtcaatatagttcttgacgttaaaataatccct 1517779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 12676433 - 12676503
Alignment:
Q  47 aatgtatcgaaat-tcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||||||| | |||||| || |||||||||||||| ||||||||||||| | ||||||||||||||    
T  12676433 aatgtatcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaat 12676503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 29926926 - 29926868
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    |||||| || ||||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  29926926 aaaatagtcaatgattgtgcatttcattagtcaaaatagtctttgacgttaaaatagtc 29926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 20167660 - 20167575
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| ||| ||||||| ||| ||||| ||||||| ||| ||||||| ||||| ||||| |||||||||||||||| ||||||||    
T  20167660 cacaatagtcactcaatgcatcaaaattgcaaaatattccctgattgtacactttgttagacaaaatagtctctgacattaaaata 20167575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 14233788 - 14233722
Alignment:
Q  153 gaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||  ||| |||||||| |||||| | |||||||| ||| ||||||||||||||||||    
T  14233788 gaaatgatatttgaacatccattttgtgacaacttttgtgacaaatttctctctcatactcatatta 14233722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 28245727 - 28245796
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||| | ||||||||||||| | |||||||| ||| ||||||||||||| ||||    
T  28245727 tgagaaatgatatttgaacatctattttgcgacaacttttgtgacaactttctctctcatactcacatta 28245796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 34134850 - 34134781
Alignment:
Q  143 ttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    ||||| ||||||||||||||||| ||||||||||||  ||||| | | |||||| ||| |||||||||||    
T  34134850 ttttaaatgagaaatgatatttttacaaccattttgtaacaacttttctgacaactttctctctcatact 34134781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 6336252 - 6336320
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||   ||||| | |||||||| ||| ||||||||||||||||||    
T  6336252 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcatatta 6336320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 23359422 - 23359466
Alignment:
Q  72 atgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  23359422 atgattgtgtactacgttagtcaaaatagtctctaacgttaaaat 23359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 38821357 - 38821429
Alignment:
Q  142 tttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||| || ||||||||||||||  |||||||||||  |||||| | |||||||||||| | |||||||||||    
T  38821357 tttttgtaagagaaatgatatttgaacaaccattttatgacaacttttgtgacaattttctttctcatactca 38821429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 31296916 - 31296854
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  |||||||||||| |||||| | | |||||| |||||||||||||||||    
T  31296916 gagaaatgatatttgtacaaccattttgtgacaacgt-tttgacaactttatctctcatactca 31296854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 6999140 - 6999071
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  6999140 tgagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 6999071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 7502498 - 7502433
Alignment:
Q  152 agaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatat 217  Q
    |||||||||||||  |||||||||||  |||||  | |||||||| ||| ||||||||||||||||    
T  7502498 agaaatgatatttgtacaaccattttttgacaatttttgtgacaactttctctctcatactcatat 7502433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 8001988 - 8002017
Alignment:
Q  88 ttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||||||||||||||||||||    
T  8001988 ttagtcaaaatagtctctgacgttaaaata 8002017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 30413797 - 30413737
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    ||||||||||||||  ||||||||||||| |||| || | |||||| |||||||||||||||    
T  30413797 gagaaatgatatttgtacaaccattttgctacaa-ctttttgacaactttatctctcatact 30413737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 35150444 - 35150473
Alignment:
Q  91 gtcaaaatagtctctgacgttaaaatagtc 120  Q
    ||||||||||||||||||||||||||||||    
T  35150444 gtcaaaatagtctctgacgttaaaatagtc 35150473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 2308393 - 2308326
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||  |||||||| | |||||| ||||||||||||||||| ||||    
T  2308393 gagaaatgatatttgtacaaccaatttttgacaaccttt-tgacaactttatctctcatactcacatta 2308326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 5707920 - 5707996
Alignment:
Q  41 tctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||| |||||||||| |||||||||   ||||||  ||||  ||| |||||||| |||||||||||||||||    
T  5707920 tctctcaatatatcgaaatttcaaaataatatttgattgatcactatgttggtcaaaatggtctctgacgttaaaat 5707996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 6170629 - 6170693
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||  ||| |||||||  |||||| | |||||||| ||| |||||||||||||    
T  6170629 tgagaaatgatatttcaacatccattttatgacaacttttgtgacaactttctctctcatactca 6170693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 6788513 - 6788469
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||| |||||||| |||||||||||| | |||||||    
T  6788513 tgattgtgcactttgttagtcagaatagtctctgatgctaaaata 6788469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 13765400 - 13765464
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcat 215  Q
    ||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||||    
T  13765400 gagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcat 13765464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 25881544 - 25881612
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| | ||||||||||||  | |||||||| ||| ||||||||||||| ||||    
T  25881544 gagaaatgatatttgaacatctattttgcgacaatttttgtgacaactttctctctcatactcacatta 25881612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 27490801 - 27490734
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| ||||||| ||||||||||    
T  27490801 gagaaatgatatttgaacaaccatttt-tgacaacttttgtgacaactttctctctcacactcatatta 27490734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 34549283 - 34549339
Alignment:
Q  48 atgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtct 103  Q
    ||||||| |||||| |||||| || |||| |||| ||||||||||||||||||||||    
T  34549283 atgtatcaaaattctaaaatagtctatgactgtgtacttcgttagtcaaaatagtct 34549339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 35589458 - 35589390
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| |||||||| |||||| | ||  |||||||| ||||||||||||| ||||    
T  35589458 gagaaatgatatttgaacatccattttgtgacaacttttgcaacaattttctctctcatactcacatta 35589390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 36132974 - 36133041
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||| |||||  | |||||||| ||||||||||||||||| ||||    
T  36132974 gagaaatgatatttgtacaaccactttgtgacaattt-tgtgacaactttatctctcatactcacatta 36133041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 37731271 - 37731211
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatac 211  Q
    ||||||||||||||  ||||||| |||  |||||| | |||||||||||| ||||||||||    
T  37731271 gagaaatgatatttgaacaaccactttttgacaacttttgtgacaattttctctctcatac 37731211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 10219543 - 10219660
Alignment:
Q  1 tcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaata 99  Q
    ||||||| ||| |||||||| | ||||| ||||||||| ||| || ||||| |||||||| ||||||| | | ||||||||||||| |||||||||||||    
T  10219543 tcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagtcaaaata 10219642  T
Q  100 gtctctgacgttaaaata 117  Q
    ||||||||||||||||||    
T  10219643 gtctctgacgttaaaata 10219660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 10335548 - 10335618
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||| ||||    
T  10335548 atgagaaatgatattttgacaaccattttgtgacgacttatgtgacaactttatctctcatactcacatta 10335618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 516045 - 515969
Alignment:
Q  48 atgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccct 123  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  516045 atgtatcgaaattccaaaatagtcaatgattgtgcacttcgttagtcaaaatagtctctgatgttaagatggtccct 515969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10067821 - 10067704
Alignment:
Q  1 tcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaa-ttcaaaataatccatgattgtgcacttcgttagtcaaaata 99  Q
    |||||||||||  ||||||| | || || | ||||||| ||||||||||||||||||| || |||||| ||  |||||||| | || |||| ||||||||    
T  10067821 tcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctgattgtgtattttgttaatcaaaata 10067722  T
Q  100 gtctctgacgttaaaata 117  Q
    ||||||||| ||||||||    
T  10067721 gtctctgacattaaaata 10067704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 19134312 - 19134390
Alignment:
Q  44 ctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccc 122  Q
    ||||||||||| |||||| |||||| ||| | ||||||||| ||||||||| ||||||||||| | ||||||||||||||    
T  19134312 ctcaatgtatcaaaattccaaaatactccctaattgtgcacctcgttagtc-aaatagtctctaatgttaaaatagtccc 19134390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 33806702 - 33806773
Alignment:
Q  47 aatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||||| |||||| ||  ||||| || |||| ||||||||||||||||||| |||||||||||    
T  33806702 aatgtatcgaaattctaaaatagtcattgattatgtactttgttagtcaaaatagtctctaacgttaaaata 33806773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 6531255 - 6531186
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||| |||||||| |||||| |||| ||||| ||| ||||||||||||| ||||    
T  6531255 tgagaaatgatatttgaacatccattttgtgacaacttatgggacaactttctctctcatactcacatta 6531186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 9436561 - 9436602
Alignment:
Q  75 attgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  9436561 attgtgcacttcgttagtcaaaattgtttctgacgttaaaat 9436602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 10826504 - 10826569
Alignment:
Q  154 aaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||| |||||||||| |||||| || ||||||||||||| ||| ||| ||| ||||    
T  10826504 aaatgatattttgataaccattttgtgacaacttaagtgacaattttatttcttatattcacatta 10826569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 24834981 - 24834940
Alignment:
Q  79 tgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  24834981 tgcacttcattagtcaaaatagtctctgatgttaaaatagtc 24834940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 29376796 - 29376752
Alignment:
Q  141 atttttatatgagaaatgatattttgacaaccattttgcgacaac 185  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||    
T  29376796 atttttaaatgagaaatgatatttttacaaccattttgtgacaac 29376752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 6164261 - 6164194
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatt 218  Q
    ||||||||||||||  ||||||| ||||| |||| || | |||||| ||||||||||||| |||||||    
T  6164261 gagaaatgatatttgaacaaccaatttgcaacaaactttttgacaactttatctctcataatcatatt 6164194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 25924939 - 25924873
Alignment:
Q  147 atatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||||  ||||||||||||| |||| || | |||||| ||| |||||||||||||    
T  25924939 atatgagaaatgatatttgtacaaccattttgctacaa-ctttttgacaactttctctctcatactca 25924873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 29619654 - 29619603
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaa 113  Q
    |||||| |||||||||||  ||||||||||||||||||||| || |||||||    
T  29619654 aaaatagtccatgattgtaaacttcgttagtcaaaatagtcactaacgttaa 29619603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 23887796 - 23887738
Alignment:
Q  59 ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||| ||| | ||||||||||| || ||||||||||||||| |||| |||||||    
T  23887796 ttcaaaatagtccctaattgtgcactttgtaagtcaaaatagtctcggacgataaaata 23887738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 8747168 - 8747233
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcat 215  Q
    ||||| |||||||||| ||| |||||||| |||||| | ||| |||| ||| ||||||||||||||    
T  8747168 tgagatatgatattttaacatccattttgtgacaacttttgttacaactttctctctcatactcat 8747233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 10219834 - 10219781
Alignment:
Q  64 aataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||| |||||||||||||||||  ||||||||||||||||  |||| |||||||    
T  10219834 aatagtccatgattgtgcactttattagtcaaaatagtcttcgacgctaaaata 10219781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 33712315 - 33712380
Alignment:
Q  146 tatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatac 211  Q
    |||||||||||||||||||  ||||||| |||  |||||| | |||||||| ||| ||||||||||    
T  33712315 tatatgagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatac 33712380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 10349764 - 10349816
Alignment:
Q  50 gtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagt 101  Q
    ||||||||||| ||||||| ||| | |||||||||||||||| ||||||||||    
T  10349764 gtatcgaaatttcaaaatagtccttcattgtgcacttcgttaatcaaaatagt 10349816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 11589963 - 11590007
Alignment:
Q  75 attgtgcacttcgttagtcaaaatagtctctgacgttaaaatagt 119  Q
    ||||| ||||||||||||||||||||||| |||  ||||||||||    
T  11589963 attgtacacttcgttagtcaaaatagtctttgatattaaaatagt 11590007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 17551450 - 17551382
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | ||| |||| ||| ||||||||||||| ||||    
T  17551450 gagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacatta 17551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 20822939 - 20822871
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  20822939 gagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 20822871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 25085112 - 25085068
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||| ||||||||||||||||| | || ||||||||    
T  25085112 tgattgtgcactttgttagtcaaaatagtctttaacattaaaata 25085068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 35600671 - 35600739
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  35600671 gagaaatgatattttgacaaccattttgtgacaacctatgtgacaattttatctttcatactcacatta 35600739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 36703943 - 36703875
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  36703943 gagaaatgatattttgacaaccattttgtgacaacatatgtgacaattttatctctcatactcacatta 36703875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 17945068 - 17945135
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||    
T  17945068 gagaaatgatattttgacaaccattttgtgacaa-ctatgtgacaactttatctctcatactcacatta 17945135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 45815327 - 45815259
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||| ||||    
T  45815327 gagaaatgatattttgacaaccattttgtgacaatatatgtgacaactttatctctcatactcacatta 45815259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 38656534 - 38656603
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||||||||||||||| || ||| ||| |||||| ||||||||||||| ||||||||    
T  38656534 tgagaaatgatattttgacaaccattttgtgagaacttatttgacaactttatctctcatattcatatta 38656603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 33776367 - 33776427
Alignment:
Q  159 atattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  33776367 atattttgacaaccattttgtgacaacctatatgacaactttatctctcatactcacatta 33776427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 39608353 - 39608422
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagt 101  Q
    |||||| ||||||||||||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||    
T  39608353 cacaatagtctctcaatgtatcgaaatttcaaaataatcattgatcgtgcacttcgttagttaaaatagt 39608422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 10228752 - 10228822
Alignment:
Q  47 aatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||||||||||| ||||||| ||  |||||||||| |||||||||||||||||||| |||| |||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaat 10228822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 15564911 - 15564979
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||| ||||||||||||  | |||||||| |||| |||||||||||||||||    
T  15564911 gagaaatgatatttgtacaactattttgcgacaatttttgtgacaactttagctctcatactcatatta 15564979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 21401757 - 21401873
Alignment:
Q  1 tcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaattcaaaataatccatgattgtgcacttcgttagtcaaaatag 100  Q
    ||||||| ||| || ||||| | ||||| ||| ||||| ||| |||| | |||||||||| |||||| |||||||||||  ||||||||||||||  ||     
T  21401757 tcattttggtctctaaatgtgtaacgagtagctacaatagtccctcactatatcgaaatttaaaatagtccatgattgtaaacttcgttagtcaatttaa 21401856  T
Q  101 tctctgacgttaaaata 117  Q
    || ||||| ||||||||    
T  21401857 tcactgacattaaaata 21401873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 46720044 - 46719996
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtcc 121  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  46720044 tgattgtgcactttgttagtcaaaatagtttttgacgttaaaatagtcc 46719996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 37899323 - 37899386
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  ||| |||||||| |||||| | |||||||| |||||||||||||||||    
T  37899323 gagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttatctctcatactca 37899386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 5362279 - 5362367
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||  |||||| | |||||||||||| ||||||| | |||||||||| | || |||||||||||||||| ||||  ||||||||    
T  5362279 agccacaacagtctcttagtgtatcgaaatttcaaaatagttcatgattgtgtaatttgttagtcaaaatagtccctgatattaaaata 5362367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 14669565 - 14669485
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgtta 112  Q
    |||||| ||||||||||||||| |||||| |||||| | | ||||||||||||  |||||||||| |||||  ||||||||    
T  14669565 cacaatagtctctcaatgtatcaaaattctaaaatagttcttgattgtgcactctgttagtcaaagtagtccttgacgtta 14669485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 21402001 - 21401957
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  21402001 tgattgtgcactttgttagtcgaaatagtctctgacgctaaaata 21401957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 44184630 - 44184562
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| | ||||||||||||| | |||||||| ||| ||||||||||||| ||||    
T  44184630 gagaaatgatatttgaacatctattttgcgacaacttttgtgacaactttctctctcatactcacatta 44184562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 12007257 - 12007194
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| |||||||||||||    
T  12007257 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 12007194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 24127183 - 24127262
Alignment:
Q  24 acgagcagccacaatggtctctcaatgtatcgaaattcaaaataa-tccatgattgtgcacttcgttagtcaaaatagtc 102  Q
    |||||||| |||||| |||  ||||||||| ||||||| ||| || | | ||||||||||| ||||||||||||||||||    
T  24127183 acgagcaggcacaatagtccatcaatgtattgaaattctaaaaaagttcttgattgtgcacctcgttagtcaaaatagtc 24127262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 33050175 - 33050245
Alignment:
Q  143 ttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||| ||||||||||||||||  |||||||||||| |||||| | ||| |||| ||| |||||||||||||    
T  33050175 ttttaaatgagaaatgatatttgtacaaccattttgtgacaacttttgt-acaactttctctctcatactca 33050245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 34108929 - 34108858
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||| |  |||||||||||   ||||| | |||||||||||| ||||||||||||| ||||    
T  34108929 tatgagaaatgatatatgtacaaccattttctaacaacttttgtgacaattttctctctcatactcacatta 34108858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 47448826 - 47448889
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| |||||||||||||    
T  47448826 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 47448889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 31329424 - 31329356
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||| ||||||  ||||||||||| ||||||| | |  ||||||||||||||||||||||||||||    
T  31329424 atgagaaattatatttgtacaaccatttt-cgacaactttta-gacaattttatctctcatactcatatta 31329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 22816951 - 22816984
Alignment:
Q  152 agaaatgatattttgacaaccattttgcgacaac 185  Q
    ||||||||||||||||||||||||||| ||||||    
T  22816951 agaaatgatattttgacaaccattttgtgacaac 22816984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 32777780 - 32777715
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||  |||||||||||  |||||| | | |||||| ||| |||||||||||||    
T  32777780 atgagaaatgatatttgaacaaccattttttgacaacttttatgacaactttctctctcatactca 32777715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 32996569 - 32996480
Alignment:
Q  34 acaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccc 122  Q
    ||||| ||| ||||||| ||| |||||| |||||| ||  ||||||||||||| |||| ||||||||||||  |||| ||||||| ||||    
T  32996569 acaatagtccctcaatgcatcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaatagtctacgacgctaaaataatccc 32996480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 13152593 - 13152660
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  13152593 gagaaatgatatttgaacaaccattttt-gacaacttttgtgacaactttctctctcatactcacatta 13152660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 14669290 - 14669354
Alignment:
Q  52 atcgaaat-tcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaa 115  Q
    |||||||| |||||||| ||  ||||||||||||  ||||||||||||||||  |||||||||||    
T  14669290 atcgaaatatcaaaatagtctctgattgtgcactatgttagtcaaaatagtccttgacgttaaaa 14669354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 19426580 - 19426647
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||| ||||| || | |||||| ||| ||||||||||||| ||||    
T  19426580 gagaaatgatatttgtacaaccattttgtgacaa-ctttttgacaactttctctctcatactcacatta 19426647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 24352357 - 24352409
Alignment:
Q  49 tgtatcgaaattcaaaataatccatgattgtgcacttcgttagtcaaaatagt 101  Q
    |||||| |||||| ||||||| |||||||||||||| | ||| ||||||||||    
T  24352357 tgtatccaaattctaaataattcatgattgtgcactacattaatcaaaatagt 24352409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 33180781 - 33180713
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||  ||||||| |||||| | | |||||||||| ||||||||||||| ||||    
T  33180781 gagaaatgatatttgaacattcattttgtgacaacttttatgacaattttctctctcatactcacatta 33180713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 41590591 - 41590527
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcat 215  Q
    ||||||||||||||  |||||||||||   |||||   | |||||||||||||||||||||||||    
T  41590591 gagaaatgatatttgtacaaccattttataacaactattatgacaattttatctctcatactcat 41590527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 46260163 - 46260095
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||   ||||| | |||||||| ||||||||||||| | ||||||    
T  46260163 gagaaatgatatttatacaaccattttaaaacaacttttgtgacaactttatctctcatatttatatta 46260095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 536349 - 536279
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  536349 atgagaaatgatattttgacaaccattttgtgacaacctatgtgacaactttatctctcacactcacatta 536279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 48152357 - 48152289
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||    
T  48152357 gagaaatgatattttgacaaccattttgtgacaatctatgtgacaactttatctctcatactcacatta 48152289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 14984424 - 14984529
Alignment:
Q  13 ctgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgtt 111  Q
    |||||||| | ||||| || |||||| ||| |||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||  ||||| ||    
T  14984424 ctgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtcaaaatagttcctgacatt 14984523  T
Q  112 aaaata 117  Q
    ||||||    
T  14984524 aaaata 14984529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 41670653 - 41670585
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||  |||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||    
T  41670653 gagaaatgatatcatgacaaccattttgtgacaacctaggtgacaactttatctctcatactcacatta 41670585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 38989918 - 38989871
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38989918 tgattgtgcacttcgttggtcaaaatagtctctgacgttaaaatagtc 38989871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 29030875 - 29030817
Alignment:
Q  154 aaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||    
T  29030875 aaatgatattttgacaatcattttgtgacaacctaggtgacaactttatctctcatact 29030817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 1183294 - 1183200
Alignment:
Q  24 acgagcagccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||| |||| ||||| |||  |||||||| ||||||| |||||||||| ||||||||||||||||  |||||||||||||| |||  ||||||||    
T  1183294 acgaacagctacaatagtcattcaatgtaccgaaatttcaaaataatctatgattgtgcacttcgacagtcaaaatagtctttgatattaaaata 1183200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 22235252 - 22235309
Alignment:
Q  59 ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||| ||  ||||||| ||||||||||||||||||||||||| ||||||||||    
T  22235252 ttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtctctcacgttaaaat 22235309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 30843872 - 30843787
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| |||||| |||||||| |||||| |||||| ||  ||||||||||||| |||| ||||||||||| |||||| |||||||    
T  30843872 cacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgcactttgttaatcaaaatagtccctgacgctaaaata 30843787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 49196696 - 49196763
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||| ||||| || |||||||||||| ||||||||||||| ||||    
T  49196696 gagaaatgatatttgtacaaccattttgtgacaa-ctttgtgacaattttctctctcatactcacatta 49196763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 621917 - 621842
Alignment:
Q  43 tctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||||| ||||| ||||||| ||| | | ||||||||| ||||||||||||||||| ||| |||||||||    
T  621917 tctcaatgtatcaaaatttcaaaatagtccctaactgtgcactttgttagtcaaaatagtctttgatgttaaaata 621842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 1183031 - 1183075
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||    
T  1183031 tgattgtgcactttgttagtcaaaatagtctctgatgctaaaata 1183075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 29573428 - 29573364
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||  ||||||||||||  ||||| | |||||||| ||| |||||||||||||    
T  29573428 tgagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcatactca 29573364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 35272027 - 35272094
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||| |||||||| | |||||| ||||||| ||||||||||||||    
T  35272027 gagaaatgatatttgtacaaccactttgtgacaacct-tttgacaactttatctttcatactcatatta 35272094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 43838850 - 43838806
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||| || ||||||||||||||||| |||||||||||||    
T  43838850 tgattgtgcattttgttagtcaaaatagtctttgacgttaaaata 43838806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 45693750 - 45693814
Alignment:
Q  155 aatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||| ||||||||||||||| |||||  || ||||||| ||||||||||||| ||| ||||    
T  45693750 aatgatatcttgacaaccattttgtgacaatttaggtgacaactttatctctcatagtcacatta 45693814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 46019462 - 46019530
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| | ||||||||||||| | |||||||| ||| ||||||||||||| ||||    
T  46019462 gagaaatgatatttgaacatctattttgcgacaacttttgtgacaactttctctctcatactcacatta 46019530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 48405410 - 48405478
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||| |||||| | ||| |||| ||| ||||||||||||| ||||    
T  48405410 gagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcacatta 48405478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 52963387 - 52963319
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||   ||||| | |||||||||||| ||||||||| ||||||||    
T  52963387 gagaaatgatatttgtacaaccattttttaacaacttttgtgacaattttttctctcatattcatatta 52963319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 53706023 - 53705947
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctct 105  Q
    ||||| ||| ||| |||| |||||||||||| ||||||| ||||| ||||||||||| || |||||||||| |||||    
T  53706023 agccaaaatagtccctcactgtatcgaaatttcaaaatagtccataattgtgcactttgtcagtcaaaataatctct 53705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 10811135 - 10811198
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| |||||||||||||    
T  10811135 gagaaatgatatttgaacaaccattttatgacaacttttgtgacaactttctctctcatactca 10811198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 22235537 - 22235462
Alignment:
Q  47 aatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtcc 121  Q
    |||||||||||||| |||||||||   |||||||||| || ||||||||||||| |||||  |||||| |||||||    
T  22235537 aatgtatcgaaatttcaaaataatttttgattgtgcaatttgttagtcaaaataatctctaccgttaatatagtcc 22235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 32536466 - 32536541
Alignment:
Q  47 aatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtcc 121  Q
    ||||||| ||||||| ||||||||   |||||||||| ||||||||| |||||| | |||| ||||||||||||||    
T  32536466 aatgtattgaaattctaaaataatttttgattgtgcatttcgttagttaaaataatttctgccgttaaaatagtcc 32536541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 47944329 - 47944408
Alignment:
Q  41 tctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagt 119  Q
    ||||| ||||||||||||||  |||||| ||  ||||||||||||| ||||||||||||| | | |||||||||| ||||    
T  47944329 tctctgaatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaataatatatgacgttaaactagt 47944408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 1109406 - 1109368
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaaccta 188  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  1109406 tgagaaatgatattttgacgacccttttgcgacaaccta 1109368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 6178498 - 6178429
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||  ||||| |||||  |||||| | |||||||||||| ||||||||||||| ||||    
T  6178498 atgagaaatgatatttgtacaactattttt-gacaacttttgtgacaattttctctctcatactcacatta 6178429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 37289411 - 37289341
Alignment:
Q  75 attgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccctgaacgccgacattaactatttt 145  Q
    ||||| |||||||||||| || ||||||  |||||||||||||||| || || || || ||||||||||||    
T  37289411 attgtacacttcgttagtgaagatagtcattgacgttaaaatagtctcttaatgctgatattaactatttt 37289341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 40618995 - 40619069
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaattcaaaataatccatgattgtgcacttcgttagtc-aaaatagtctctg 106  Q
    |||||| |||||  |||||||  |||||||||||||||| ||| |||||| || ||||||| |||||||||||||    
T  40618995 cacaatagtctccaaatgtataaaaattcaaaataatccttgactgtgcaatttgttagtcaaaaatagtctctg 40619069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 48048104 - 48048034
Alignment:
Q  47 aatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||||||||| |||| | ||| |||||||||| |||||| |||||||||||| ||  |||||||||    
T  48048104 aatgtatcgaaattccaaaacagtccctgattgtgcatttcgtttgtcaaaatagtccctcgcgttaaaat 48048034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 10566103 - 10566156
Alignment:
Q  47 aatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaata 99  Q
    |||||||| ||||| ||||||||||  ||||||| |||||||||||||||||||    
T  10566103 aatgtatcaaaatttcaaaataatcattgattgtccacttcgttagtcaaaata 10566156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 11327106 - 11327170
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||  |||||||||||| |||||| | ||| |||| ||| |||||||||||||    
T  11327106 atgagaaatgatatttgtacaaccattttgtgacaacttttgt-acaactttctctctcatactca 11327170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 14207330 - 14207261
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||||| ||||||  ||||| | |||||||| ||| ||||||||||||| ||||    
T  14207330 tgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactcacatta 14207261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 14215078 - 14215009
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||||| ||||||  ||||| | |||||||| ||| ||||||||||||| ||||    
T  14215078 tgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactcacatta 14215009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 16969638 - 16969570
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||| |||||||||||  |||||| | | |||||| ||| ||||||||||||| ||||    
T  16969638 tgagaaatgatattttaacaaccatttt-tgacaacttttttgacaactttctctctcatactcacatta 16969570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 21196124 - 21196185
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    ||||||||||||||  ||| |||||||| |||||| | |||||||| ||| |||||||||||    
T  21196124 gagaaatgatatttgaacatccattttgtgacaacttctgtgacaactttctctctcatact 21196185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 23770802 - 23770769
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaa 184  Q
    |||||||||||||||||||||||||||| |||||    
T  23770802 gagaaatgatattttgacaaccattttgtgacaa 23770769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 26019878 - 26019826
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||| ||||||||||||||   ||||||||||||||||||  ||||||||    
T  26019878 aaaataatccctgattgtgcacttc---agtcaaaatagtctctgatattaaaata 26019826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 31446235 - 31446158
Alignment:
Q  142 tttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||| || ||||||| ||||||  |||||||||||| |||||| ||| |||||||||  | ||||||||||| ||||    
T  31446235 tttttttaggagaaataatatttgaacaaccattttgtgacaacttatatgacaatttcctttctcatactcacatta 31446158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 37035585 - 37035552
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaa 184  Q
    |||||||||||||||||||||||||||| |||||    
T  37035585 gagaaatgatattttgacaaccattttgtgacaa 37035552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 40618941 - 40618986
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctga 107  Q
    |||||||||| |||||||||| || ||||||||||||||| |||||    
T  40618941 aaaataatccttgattgtgcaatttgttagtcaaaatagtatctga 40618986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 41877686 - 41877750
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||  ||||||||||||| |||| || | |||||| ||| |||||||||||||    
T  41877686 atgagaaatgatatttgtacaaccattttgctacaa-ctttttgacaactttctctctcatactca 41877750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 45681167 - 45681244
Alignment:
Q  40 gtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||||||||| ||||| ||||||| ||| ||||||||| ||   ||| |||||||||||||| | ||||||||    
T  45681167 gtctctcaatgtatcaaaatttcaaaatagtccttgattgtgcgctatattaatcaaaatagtctcttatgttaaaat 45681244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 48352995 - 48353064
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||| |||||||   ||||| | |||||||| ||| ||||||||||||||||||    
T  48352995 tgagaaatgatatttgtacatccattttttaacaacttttgtgacaactttctctctcatactcatatta 48353064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 48944782 - 48944714
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  |||||||||||   ||||| | ||| |||||||| ||||||||||||||||||    
T  48944782 tgagaaatgatatttgtacaaccattttctaacaacttttgt-acaattttctctctcatactcatatta 48944714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 50559283 - 50559222
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    ||||||||||||||  ||||| |||||  |||||| | |||||||||||| |||||||||||    
T  50559283 gagaaatgatatttgtacaactattttttgacaacttttgtgacaattttctctctcatact 50559222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 51464344 - 51464276
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||||||| |||| |||||| | | |||||| ||||||||||||||||| ||||    
T  51464344 tgagaaatgatatttgtacaaccactttgtgacaactttt-tgacaactttatctctcatactcacatta 51464276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 14194994 - 14194906
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||| |||  | |||||||| ||||| ||||||| ||||| ||| |||||||| | |||||| |||||||||||  ||||||||    
T  14194994 agccacaatagtcctttaatgtatcaaaatttcaaaatagtccattattatgcacttcttaagtcaatatagtctctgatattaaaata 14194906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 16479632 - 16479699
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||||||||  ||||| | |||||||| ||| ||||||||||||| ||||    
T  16479632 gagaaatgatatttgtacaaccattttg-tacaacttttgtgacaactttctctctcatactcacatta 16479699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 32362933 - 32362993
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatac 211  Q
    ||||||||||||||  |||||||||||  |||||| | | |||||| ||||||||||||||    
T  32362933 gagaaatgatatttgaacaaccattttttgacaacttttatgacaactttatctctcatac 32362993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 37894314 - 37894246
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||   ||||| | |||||||| ||| ||||||||||||| ||||    
T  37894314 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacatta 37894246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 37927277 - 37927213
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||  ||| |||||| | |||||| | |||||||| ||| |||||||||||||    
T  37927277 tgagaaatgatatttgaacatccatttggtgacaacttttgtgacaactttctctctcatactca 37927213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 46473128 - 46473195
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||||||||| || | | |||||||| ||||||||||||| ||||    
T  46473128 gagaaatgatatttgtacaaccactttgcgacaa-ctttttaacaattttctctctcatactcacatta 46473195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 55399999 - 55400067
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  55399999 gagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 55400067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 49660179 - 49660247
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  49660179 gagaaatgatattttaacaaccattttgtgacaacctatgtgacaactttatctctcatactcacatta 49660247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 43560204 - 43560272
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||| |||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||    
T  43560204 gagaaatgatattttcacaaccattttgtgacaatctaggtgacaactttatctctcatactcacatta 43560272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 33070602 - 33070665
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||||| | |||||||||    
T  33070602 gagaaatgatattttgacaaccattttatgacaacttatgtgacaattttatttttcatactca 33070665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 6541309 - 6541255
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  6541309 aaaataatccatgattgtgcactttgtaagtcaaaatagtctccgacgttaaaat 6541255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 37516524 - 37516592
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||| |||||||  ||||  ||| |||||||||||||||||||||||| ||||    
T  37516524 gagaaatgatattttgacaatcattttgtaacaatttatatgacaattttatctctcatactcacatta 37516592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 11037183 - 11037242
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    |||||||||||||||||||||||||||| |||||||  ||||| || |||||||||||||||    
T  11037183 gagaaatgatattttgacaaccattttgtgacaacc--tgtgataactttatctctcatact 11037242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 35684945 - 35684887
Alignment:
Q  45 tcaatgtatcgaaat-tcaaaataatccatgattgtgcacttcgttagtcaaaatagtc 102  Q
    |||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||    
T  35684945 tcaatgtatcaaaatctcaaaatagtccatgattgtgcagttcgttagtcaaaatagtc 35684887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 39712381 - 39712446
Alignment:
Q  154 aaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||||||||||| || || ||||||||||| |||||| |||||| ||| ||||    
T  39712381 aaatgatattttgacaaccattttgtgataatctatgtgacaactttatcgctcatattcacatta 39712446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 30050665 - 30050577
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||| ||| ||| || |||||||||||||| ||||||| || |||||| |||| || ||||||||||||||||||| || ||||||||    
T  30050665 agccaaaatagtcccttaatgtatcgaaatttcaaaatagtctatgattatgcaatttgttagtcaaaatagtctctcacattaaaata 30050577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 46758398 - 46758437
Alignment:
Q  180 gacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  46758398 gacaatctatgtgacaattttatctctcatactcatatta 46758437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 27463968 - 27463890
Alignment:
Q  40 gtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||||| ||||| ||||||| ||  || |||||||||||||||| |||||||||  || |||||||||||    
T  27463968 gtctctcaatgtatcaaaatttcaaaatagtctctggttgtgcacttcgttagacaaaatagttcctaacgttaaaata 27463890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34177283 - 34177385
Alignment:
Q  1 tcattttagtcactgaatgtttgacgagcagccacaatggtctctcaatgtatcgaaa-ttcaaaataatccatgattgtgcacttcgttagtcaaaata 99  Q
    ||||||||||| |||||| | | ||||| ||||||||| |||| ||||| |||| ||| ||||||||| ||| ||||||| || || |||||||||| ||    
T  34177283 tcattttagtccctgaatatgtaacgaggagccacaatcgtctttcaatatatcaaaatttcaaaatagtccttgattgtccattttgttagtcaaatta 34177382  T
Q  100 gtc 102  Q
    |||    
T  34177383 gtc 34177385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 49020477 - 49020407
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||  |||||||||||   ||||| | |||||||||||| ||||||||||||| ||||    
T  49020477 atgagaaatgatatttgtacaaccattttttaacaacttttgtgacaattttttctctcatactcacatta 49020407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 34177526 - 34177469
Alignment:
Q  59 ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||| |||||||||||||| |  ||||||||||||||||||| || |||||||    
T  34177526 ttcaaaatagtccatgattgtgcattatgttagtcaaaatagtctcttacattaaaat 34177469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 9567032 - 9566964
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  9567032 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacatta 9566964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 33747319 - 33747391
Alignment:
Q  45 tcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||||||||||||| ||||| | |   ||||| |||||||||||||||||||||||||||||  |||||||    
T  33747319 tcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtcaaaatagtctctgatattaaaat 33747391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 35607224 - 35607268
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||    
T  35607224 tgattgtgcatttcgttagtcaaaataatctatgacgttaaaata 35607268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 3728099 - 3728154
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| |||||||||||| | |  ||||||||||||||||||| |||||||||||    
T  3728099 aaaatagtccatgattgtgtattatgttagtcaaaatagtctcttacgttaaaata 3728154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 5529908 - 5529853
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||| | ||| ||||||| ||||||||||||||| |||||| ||||||||    
T  5529908 aaaataatccctaattatgcactttgttagtcaaaatagtttctgacattaaaata 5529853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 32743368 - 32743313
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||  ||||||| || |||||||||||||||| |||||||| ||||||||    
T  32743368 aaaataatctttgattgtacatttcgttagtcaaaataatctctgacattaaaata 32743313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 39330241 - 39330194
Alignment:
Q  59 ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctg 106  Q
    ||||| ||| |||||||||||||| ||||||||| |||||||||||||    
T  39330241 ttcaatatagtccatgattgtgcaattcgttagttaaaatagtctctg 39330194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 45679776 - 45679721
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| | |||||||||||| ||||||||||||||||||| || | |||||||||    
T  45679776 aaaatagttcatgattgtgcaattcgttagtcaaaatagtccctaatgttaaaata 45679721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 48983739 - 48983676
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| |||||||||||||    
T  48983739 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 48983676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 50239234 - 50239191
Alignment:
Q  141 atttttatatgagaaatgatattttgacaaccattttgcgacaa 184  Q
    |||||| | ||||||||||||||||||||||||||||| |||||    
T  50239234 atttttttttgagaaatgatattttgacaaccattttgtgacaa 50239191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 9890766 - 9890696
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtc 102  Q
    |||||| ||||||||||||||  |||||| ||||||   ||||||| ||||||| ||||||||||||||||    
T  9890766 cacaatagtctctcaatgtattaaaattctaaaatagatcatgattttgcactttgttagtcaaaatagtc 9890696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 23645409 - 23645478
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||| ||||||||||||   ||||| | | |||||| ||||||||||||||||| ||||    
T  23645409 atgagaaatgatatttggacaaccatttt-ttacaacttttttgacaactttatctctcatactcacatta 23645478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 6450088 - 6450129
Alignment:
Q  75 attgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  6450088 attgtgcactacttcagtcaaaatagtctctgacgttaaaat 6450129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 10890122 - 10890049
Alignment:
Q  146 tatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||| ||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  10890122 tataagagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 10890049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 11947795 - 11947856
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| |||||||||||    
T  11947795 gagaaatgatatttgtacaaccattttatgacaacttttgtgacaactttctctctcatact 11947856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 15083121 - 15083061
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatact 212  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||||||| |||||||||||    
T  15083121 gagaaatgatatttgaacaaccattttt-gacaacttttgtgacaattttctctctcatact 15083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 47642679 - 47642610
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  |||||||||||  || ||| | |||||||| ||| ||||||||||||| ||||    
T  47642679 tgagaaatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcatactcacatta 47642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 649768 - 649836
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||   ||||| | |||||||| ||| ||||||||||||| ||||    
T  649768 gagaaatgatatttgaacaaccatttttttacaacttttgtgacaactttctctctcatactcacatta 649836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 6340747 - 6340791
Alignment:
Q  173 attttgcgacaacctatgtgacaattttatctctcatactcatat 217  Q
    |||||| |||||||| |||||||| || |||||||||||||||||    
T  6340747 attttgggacaacctttgtgacaacttaatctctcatactcatat 6340791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 6728021 - 6727977
Alignment:
Q  75 attgtgcacttcgttagtcaaaatagtctctgacgttaaaatagt 119  Q
    ||||||||||  ||||||||||||||||| |||| ||||||||||    
T  6728021 attgtgcactatgttagtcaaaatagtctttgactttaaaatagt 6727977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 13355132 - 13355096
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaa 184  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  13355132 tatgagaaatgatatttttacaactattttgcgacaa 13355096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 13489662 - 13489730
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  13489662 gagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 13489730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 15705133 - 15705065
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  15705133 gagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 15705065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 21433472 - 21433404
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||||||||  ||||| | |||||||| ||| ||||| ||||||| ||||    
T  21433472 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctcttatactcacatta 21433404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 24806293 - 24806225
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  | ||||| |||  |||||| | |||||||| ||| ||||||||||||||||||    
T  24806293 gagaaatgatatttgaataaccactttttgacaacttttgtgacaactttctctctcatactcatatta 24806225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 27900658 - 27900742
Alignment:
Q  34 acaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||| |||||| |||||||| |||||  |||||| ||| ||||||||||||    ||||||||||||||| ||||| |||||||    
T  27900658 acaatagtctcttaatgtatcaaaattttaaaatagtccctgattgtgcactctaatagtcaaaatagtctttgacgctaaaata 27900742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 27900947 - 27900887
Alignment:
Q  56 aaattcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||| |||||| || ||||||||||| || ||||||| ||||||||  ||||||||||||    
T  27900947 aaatttaaaatagtctatgattgtgcaattagttagtcgaaatagtccatgacgttaaaat 27900887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 34254422 - 34254354
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||  ||||||  |||||| | |||||||| ||||||||||||||||| ||||    
T  34254422 gagaaatgatatttgaacattcattttatgacaacttctgtgacaactttatctctcatactcacatta 34254354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 34826875 - 34826919
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||| |  ||||||||||||||||| |||||||||||||    
T  34826875 tgattgtgcattctgttagtcaaaatagtctttgacgttaaaata 34826919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 37619544 - 37619611
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||| ||||||||||||  || ||| | |||||||| ||| ||||||||||||| ||||    
T  37619544 gagaaatgatatttggacaaccatttt-tgataacttttgtgacaactttctctctcatactcacatta 37619611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 48858823 - 48858891
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  48858823 gagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatactcacatta 48858891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 51436844 - 51436780
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||  ||||  |||||| |||||  | |||||||| |||||||||||||||||    
T  51436844 tgagaaatgatatttgcacaataattttgagacaatttttgtgacaactttatctctcatactca 51436780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 52362482 - 52362550
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  52362482 gagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 52362550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 6856 - 6926
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||    
T  6856 atgaaaaatgatattttgacaaccattttgtgacaatctatgtgacaactttatctctcatactcacatta 6926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 21145725 - 21145585
Alignment:
Q  13 ctgaatgtttgacgagcagccacaatg--gtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacg 109  Q
    |||||||| | ||||| |||||||||   |||| |||| |||||||||||| |||||| ||   |||| |||  |||||||||||||||||||||||| |    
T  21145725 ctgaatgtgtaacgagtagccacaatatagtctatcaacgtatcgaaattccaaaatagtctcagattatgcgtttcgttagtcaaaatagtctctgatg 21145626  T
Q  110 ttaaaatagtccctgaacgccgacattaactatttttatat 150  Q
    |||||||||||||| || || |||||||||| |||||||||    
T  21145625 ttaaaatagtccctcaatgctgacattaactctttttatat 21145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 39692302 - 39692363
Alignment:
Q  158 gatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  39692302 gatattttgacaaccattttgtgacaacctatgtgacaactttatctctcataatcacatta 39692363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 21273783 - 21273714
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||  |||||||||||| |||||| | | |||||||||||||||||||||||| ||||    
T  21273783 atgagaaatgatatttgtacaaccattttgtgacaacttct-tgacaattttatctctcatactcacatta 21273714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 5601060 - 5600995
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||  |||||||||||  |||||| | |||||||||||| |||||||||||||    
T  5601060 atgagaaatgatatttgaacaaccattttttgacaacttttgtgacaattttttctctcatactca 5600995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 5639560 - 5639625
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||  |||||||||||  |||||| | |||||||||||| |||||||||||||    
T  5639560 atgagaaatgatatttgaacaaccattttttgacaacttttgtgacaattttttctctcatactca 5639625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 6393831 - 6393907
Alignment:
Q  44 ctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagt 119  Q
    ||||||||||||||||| ||||||| | |||||||||||||||  ||||||||||||||  || || ||||||||||    
T  6393831 ctcaatgtatcgaaatttcaaaatagttcatgattgtgcactttattagtcaaaatagttcctaacattaaaatagt 6393907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 12284342 - 12284274
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatt 218  Q
    |||||||||||||||  |||||||||||  |||||| | |||||||| ||| |||||||||||||||||    
T  12284342 tgagaaatgatatttgaacaaccatttttggacaacgtttgtgacaactttctctctcatactcatatt 12284274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 21602247 - 21602159
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||| ||||||| |||||| |||||||||| ||||||| |||  ||||| ||||||| ||| ||||||||||| ||||| ||||||||    
T  21602247 agccataatggtccctcaatatatcgaaatttcaaaatagtccccgattgcgcacttcattaatcaaaatagtccctgacattaaaata 21602159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 10028429 - 10028475
Alignment:
Q  75 attgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtcc 121  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||    
T  10028429 attgtgcatttcgttagtcaaaatagtctctgacggtaatatagtcc 10028475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 25987860 - 25987790
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||  |||||||||||   ||||| | |||||||| ||||||||||||||||| ||||    
T  25987860 atgagaaatgatatttgaacaaccatttttttacaacttttgtgacaactttatctctcatactcacatta 25987790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 9549267 - 9549202
Alignment:
Q  154 aaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||  ||| |||||||| |||||| | |||||||||||| ||||||||||||| ||||    
T  9549267 aaatgatatttgaacatccattttgtgacaacttttgtgacaattttctctctcatactcacatta 9549202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 21145434 - 21145491
Alignment:
Q  59 ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    ||||||||| | ||| ||||||||||  ||||||||||||||||||| ||||||||||    
T  21145434 ttcaaaatagttcataattgtgcactatgttagtcaaaatagtctcttacgttaaaat 21145491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 34018803 - 34018876
Alignment:
Q  146 tatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||  |||||||||||  |||||| | ||  |||||||| ||||||||||||| ||||    
T  34018803 tatatgagaaatgatatttgaacaaccattttctgacaacttttgcaacaattttctctctcatactcacatta 34018876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 34718106 - 34718183
Alignment:
Q  142 tttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||| |||||||||||||||||  ||| |||||||| |||||| | ||| |||| ||| ||||||||||||| ||||    
T  34718106 tttttttatgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactcacatta 34718183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 5277775 - 5277707
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| |||||||| |||||||| ||  |||||||| ||||||||||||| ||||    
T  5277775 gagaaatgatatttgaacatccattttgtgacaacctttgctacaattttctctctcatactcacatta 5277707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 10708430 - 10708470
Alignment:
Q  79 tgcacttcgttagtcaaaatagtctctgacgttaaaatagt 119  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  10708430 tgcacctcgttagtcaaaatagtctttgacgttaaaatagt 10708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 22960489 - 22960425
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||  |||||||||||  || ||  | ||||||||||||||||||||||||||    
T  22960489 tgagaaatgatatttgtacaaccattttaggataatttctgtgacaattttatctctcatactca 22960425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 29911595 - 29911559
Alignment:
Q  81 cacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29911595 cacttcgttagtcaaaatagtctctaacgttaaaata 29911559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 3946240 - 3946303
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  ||| |||||||| |||||| | |||||||| ||| |||||||||||||    
T  3946240 gagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactca 3946303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 14523997 - 14523926
Alignment:
Q  47 aatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||| |||||||| ||||||| | | ||||||| |||||||||||||| ||||||||||| ||| ||||||    
T  14523997 aatgtgtcgaaatttcaaaatagttcttgattgttcacttcgttagtcataatagtctctggcgtcaaaata 14523926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 26026893 - 26026964
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||  |||||||||||  |||||| | |||||||| ||| | ||||||||||| ||||    
T  26026893 tatgagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctttctcatactcacatta 26026964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 7603938 - 7604004
Alignment:
Q  40 gtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctct 105  Q
    |||| |||||||||| |||||  ||||||||   ||||||||||||||||| |||||||||||||||    
T  7603938 gtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctct 7604004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 21215933 - 21215999
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaa 95  Q
    ||||||||| |||  ||||||||| |||||| ||||||| ||  |||||||||||||||||||||||    
T  21215933 agccacaatagtccttcaatgtattgaaatttcaaaatagtcattgattgtgcacttcgttagtcaa 21215999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 29509263 - 29509328
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||||  ||||||||||||| |||| || | |||||| ||| |||||||||||||    
T  29509263 tatgagaaatgatatttgtacaaccattttgctacaa-ctttttgacaactttctctctcatactca 29509328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 37449506 - 37449429
Alignment:
Q  141 atttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||| ||||||||||||||  |||||||||||   ||||| | |||||||| ||| ||||||||||||| ||||    
T  37449506 atttttataagagaaatgatatttcaacaaccatttt-ttacaacttttgtgacaactttttctctcatactcacatta 37449429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 12735084 - 12735015
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||| |  | | |||||||  |||||| | |||||||||||| ||||||||||||||||||    
T  12735084 tgagaaatgatatatgaagagccattttatgacaacttttgtgacaattttctctctcatactcatatta 12735015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 25830318 - 25830249
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  |||||||||||   ||||| | |||||||| ||| ||||||||||||| ||||    
T  25830318 tgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacatta 25830249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 31249596 - 31249528
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  |||||||||||   ||||| | |||||||||||| ||||||||||||| ||||    
T  31249596 tgagaaatgatatttgaacaaccatttttt-acaacttttgtgacaattttttctctcatactcacatta 31249528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 4586789 - 4586857
Alignment:
Q  34 acaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagt 101  Q
    ||||| |||||| |||||||  |||||  |||||| || |||||| |||||||||||||||||||||||    
T  4586789 acaatagtctcttaatgtattaaaattttaaaatagtctatgattttgcacttcgttagtcaaaatagt 4586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 5742728 - 5742661
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||||||||  ||||| | ||| |||| ||||||||||||||||| ||||    
T  5742728 gagaaatgatatttgtacaaccattttggtacaacttttgt-acaactttatctctcatactcacatta 5742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 7598708 - 7598776
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | |||||| | ||| ||||||||||||| ||||    
T  7598708 gagaaatgatatttgaacaaccattttttgacaacttttgtgaccactttctctctcatactcacatta 7598776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 7678732 - 7678799
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||| |||  |||||| | |||||||||||| ||||||||||||| ||||    
T  7678732 gagaaatgatatttgtacaaccactttttgacaactt-tgtgacaattttctctctcatactcacatta 7678799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 8340359 - 8340307
Alignment:
Q  47 aatgtatcgaaattcaaaataatccatgattgtgcacttcgttagtcaaaata 99  Q
    |||||||| ||||||||||||||   |||||||||| |||| |||||||||||    
T  8340359 aatgtatcaaaattcaaaataatttttgattgtgcatttcgctagtcaaaata 8340307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 13106468 - 13106540
Alignment:
Q  142 tttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||| ||||||||||||||||||  |||||||||||  |||||| | | |||||| ||| | |||||||||||    
T  13106468 ttttaatatgagaaatgatatttgaacaaccatttttggacaacttttttgacaactttctatctcatactca 13106540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 21600693 - 21600621
Alignment:
Q  45 tcaatgtatcgaaattcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||||| |||||||||||| ||  |||||||||| |  || |||||||||||||| ||| | |||||||    
T  21600693 tcaatgtatcaaaattcaaaatagtctttgattgtgcattctgtaagtcaaaatagtctatgaagctaaaata 21600621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 24018182 - 24018134
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtcc 121  Q
    ||||||||||||||  |||| ||| ||||||||||| ||||||||||||    
T  24018182 tgattgtgcacttctgtagttaaagtagtctctgacattaaaatagtcc 24018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 33100540 - 33100472
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||   ||||| | |||||||| ||| ||||||||||||| ||||    
T  33100540 gagaaatgatatttgaacaaccattttataacaacttttgtgacaactttctctctcatactcacatta 33100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 34435808 - 34435748
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatac 211  Q
    ||||||||||||||  ||||||| |||  |||||| | |||||||||||| ||||||||||    
T  34435808 gagaaatgatatttgaacaaccactttttgacaacttttgtgacaattttctctctcatac 34435748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 37784445 - 37784378
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||||||||||||  | ||| | ||| |||||||| ||||||||||||||||||    
T  37784445 gagaaatgatatttgtacaaccattttggtataacttttgt-acaattttctctctcatactcatatta 37784378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 43286034 - 43285966
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||| ||||||||||||   | ||| | |||||||| ||| ||||||||||||| ||||    
T  43286034 gagaaatgatatttggacaaccattttctaataacttttgtgacaactttctctctcatactcacatta 43285966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 43587632 - 43587703
Alignment:
Q  142 tttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||| ||| ||||||||||||||  | ||||||||||| |||| || | |||||||||| |||||||||||||    
T  43587632 ttttaataagagaaatgatatttgtataaccattttgctacaa-ctttttgacaattttctctctcatactca 43587703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 6217714 - 6217635
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgac 108  Q
    ||||||||| ||| ||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  6217714 agccacaatagtccctcaatgtatcaaaatttcaaaatagtccatgattatgcacttcgttagtcaaaatagtctttgac 6217635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 9742454 - 9742383
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||||||||||||||||| |||||  ||| |||||| || |||||||||||||| ||||    
T  9742454 tatgagaaatgatattttgacaaccattttgtgacaagttatctgacaacttcatctctcatactcacatta 9742383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 7756726 - 7756649
Alignment:
Q  47 aatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccct 123  Q
    ||||||| |||||| ||||||| || |||||||| || ||||||||||||||||||||||  ||||||||||||||||    
T  7756726 aatgtattgaaatttcaaaatagtcaatgattgtacaattcgttagtcaaaatagtctctcgcgttaaaatagtccct 7756649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 32270704 - 32270632
Alignment:
Q  43 tctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaa 114  Q
    |||||||||||||||||| |||||||||| ||||||||||  |  |||||||||||||||| || ||||||||    
T  32270704 tctcaatgtatcgaaatttcaaaataatctatgattgtgcgatatgttagtcaaaatagtcccttacgttaaa 32270632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 16127088 - 16127173
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||| ||||||||| ||||| ||||| ||||||| ||| |||||||| | || ||||||||||||| | | |||||||||||||    
T  16127088 cacaatagtctctcaaagtatcaaaatttcaaaatagtccttgattgtgtagtttgttagtcaaaataatatttgacgttaaaata 16127173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 21922218 - 21922153
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||||  ||| |||||||| |||||| | |||||||| ||| |||||||||||||    
T  21922218 atgagaaatgatatttgaacatccattttgtgacaacgtttgtgacaactttctctctcatactca 21922153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 22579578 - 22579481
Alignment:
Q  27 agcagccacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccct 123  Q
    ||||| |||||| |||  |||||||||| |||||  |||||||||| ||||| | ||||| |||| ||||||||||||| |||| ||||||| |||||    
T  22579578 agcagtcacaatagtccatcaatgtatcaaaattttaaaataatccctgattatacactttgttaatcaaaatagtctcggacgctaaaataatccct 22579481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 27001182 - 27001239
Alignment:
Q  60 tcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    |||||||| || ||||||||||| || ||||||||||||||||| ||| |||||||||    
T  27001182 tcaaaatagtctatgattgtgcaatttgttagtcaaaatagtctttgatgttaaaata 27001239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 42525264 - 42525333
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccctgaacgccgacattaactat 142  Q
    |||||||| ||||| |||||||||||||| |||||| || ||||||||| | || || ||||||||||||    
T  42525264 tgattgtggacttcattagtcaaaatagtttctgacattgaaatagtccatcaatgctgacattaactat 42525333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 8206106 - 8206150
Alignment:
Q  73 tgattgtgcacttcgttagtcaaaatagtctctgacgttaaaata 117  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||    
T  8206106 tgattgtgcacattgttaatcaaaatagtctctgacgttaaaata 8206150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 6446592 - 6446521
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||  | | | ||||||||||||| | |||||||| ||| ||||||||||||| ||||    
T  6446592 tatgagaaatgatatttgaagatctattttgcgacaacttttgtgacaactttctctctcatactcacatta 6446521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 8920078 - 8920141
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  ||| |||||||| |||||| | |||||||| ||| |||||||||||||    
T  8920078 gagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactca 8920141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 17676566 - 17676645
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgtt 111  Q
    |||||| ||||||||||||||| |||||| |||||| | | ||||||||||||  |||||||||| |||||  |||||||    
T  17676566 cacaatagtctctcaatgtatcaaaattctaaaatagttcttgattgtgcactctgttagtcaaagtagtccttgacgtt 17676645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 18660759 - 18660821
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||||||| |||||||||||||    
T  18660759 gagaaatgatatttgaacaaccattttt-gacaacttttgtgacaattttctctctcatactca 18660821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 18695318 - 18695381
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    ||||||||||||||  ||||||||||||  ||||| | |||||||| ||| |||||||||||||    
T  18695318 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctctcatactca 18695381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 19127113 - 19127191
Alignment:
Q  140 tatttttatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||||||||  ||||||| |||| |||||| | | |||||| | | ||||||||||||| ||||    
T  19127113 tatttttatatgagaaatgatatttgtacaaccactttgtgacaacttct-tgacaactctctctctcatactcacatta 19127191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 28306206 - 28306136
Alignment:
Q  148 tatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||  |||||||||||   ||||| | |||||||| ||||||||||||||||| ||||    
T  28306206 tatgagaaatgatatttgaacaaccatttttt-acaacttttgtgacaactttatctctcatactcacatta 28306136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 6517710 - 6517780
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||  ||| |||||||  |||||| | |||||||| ||| ||||||||||||| ||||    
T  6517710 atgagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatta 6517780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 22098253 - 22098323
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||  |||||||||||   ||||| | |||||||| ||| ||||||||||||| ||||    
T  22098253 atgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcacatta 22098323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 24147606 - 24147656
Alignment:
Q  49 tgtatcgaaattcaaaataatccatgattgtgcacttcgttagtcaaaata 99  Q
    |||||| |||||||||||||||| | ||||| ||||| |||||||||||||    
T  24147606 tgtatcaaaattcaaaataatccttaattgtacactttgttagtcaaaata 24147656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 4719645 - 4719718
Alignment:
Q  146 tatatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||||||  ||||||| |||  |||||| | ||||||||  || ||||||||||||| ||||    
T  4719645 tatatgagaaatgatatttgtacaaccaatttttgacaacttttgtgacaaccttttctctcatactcacatta 4719718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 9572505 - 9572546
Alignment:
Q  79 tgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    ||||| || |||||||||||||||| ||||||||||||||||    
T  9572505 tgcacctcattagtcaaaatagtctttgacgttaaaatagtc 9572546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 12779678 - 12779610
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    |||||||||||||||  ||||||| |||| |||||| | | |||||| ||||||||||||||||| ||||    
T  12779678 tgagaaatgatatttgtacaaccaatttgtgacaactttt-tgacaactttatctctcatactcacatta 12779610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 14468819 - 14468880
Alignment:
Q  45 tcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtctct 105  Q
    |||||||||||||||| ||||||| ||| | ||||||||||  |||| ||||||||||||||    
T  14468819 tcaatgtatcgaaatttcaaaatagtccttaattgtgcactatgttaatcaaaatagtctct 14468880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 1274358 - 1274425
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||||||| ||||||||| ||||    
T  1274358 gagaaatgatatttgaacaaccatttt-tgacaacttttgtgacaactttatctttcatactcacatta 1274425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 2707816 - 2707756
Alignment:
Q  60 tcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    |||||||| ||  ||||||| ||||| ||||||||||||||| ||||| ||| ||||||||    
T  2707816 tcaaaatagtctctgattgtacactttgttagtcaaaatagtgtctgatgttgaaatagtc 2707756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 3263580 - 3263517
Alignment:
Q  150 tgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactca 214  Q
    |||||||||||||||  ||||||| |||| |||||| | ||| |||||||| |||||||||||||    
T  3263580 tgagaaatgatatttgtacaaccaatttgtgacaacttttgt-acaattttttctctcatactca 3263517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 13089853 - 13089785
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||||||||||  |||||| | |||||||| ||| ||| ||||||||| ||||    
T  13089853 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctttcatactcacatta 13089785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 19982057 - 19981993
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcat 215  Q
    ||||||||||||||| |||| ||||||  || ||  | |||||||||||| ||||||||||||||    
T  19982057 gagaaatgatattttaacaatcattttttgataatttttgtgacaattttttctctcatactcat 19981993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 21155983 - 21156055
Alignment:
Q  147 atatgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||||  |||||||||||  |||||| | |||||||  ||| ||| ||||||||| ||||    
T  21155983 atatgagaaatgatatttgaacaaccattttttgacaacttttgtgacacctttctctttcatactcacatta 21156055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 29686760 - 29686676
Alignment:
Q  33 cacaatggtctctcaatgtatcgaaa-ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||| ||||||||||||||  ||| |||||||||||   |||||||| | |||||||||||||||| || | || ||||||||    
T  29686760 cacaatagtctctcaatgtataaaaagttcaaaataatatttgattgtgtagttcgttagtcaaaataatcccagatgttaaaat 29686676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 35075647 - 35075579
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  |||| ||||||  ||||||  ||||||||| ||| ||||||||||||| ||||    
T  35075647 gagaaatgatatttgaacaatcattttttgacaactgatgtgacaactttttctctcatactcacatta 35075579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 37853268 - 37853308
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtc 102  Q
    |||||||||  ||||||||||||| ||||||||||||||||    
T  37853268 aaaataatctttgattgtgcactttgttagtcaaaatagtc 37853308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 39194866 - 39194922
Alignment:
Q  60 tcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||||| ||  ||||||||||||| |||||||||||||||| ||| | |||||||    
T  39194866 tcaaaatagtcattgattgtgcactttgttagtcaaaatagtcactgccattaaaat 39194922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 43214130 - 43214062
Alignment:
Q  151 gagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||  ||| | ||||||| ||||| | |||||||||||| || |||||||||| ||||    
T  43214130 gagaaatgatatttgaacatctattttgcaacaacttttgtgacaattttctcactcatactcacatta 43214062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 37363 - 37437
Alignment:
Q  47 aatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtc 120  Q
    |||||||| |||||| |||||| |||||| |||||| |||||||||||||| || ||||||||||||||||||||    
T  37363 aatgtatcaaaattctaaaatagtccatgcttgtgcgcttcgttagtcaaagtattctctgacgttaaaatagtc 37437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 10962 - 11032
Alignment:
Q  149 atgagaaatgatattttgacaaccattttgcgacaacctatgtgacaattttatctctcatactcatatta 219  Q
    ||||||||||||||||  ||| |||||||| |||||| | |||||||| ||| ||||||||||||| ||||    
T  10962 atgagaaatgatatttgaacatccattttgggacaacttttgtgacaactttctctctcatactcacatta 11032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 81330 - 81403
Alignment:
Q  30 agccacaatggtctctcaatgtatcgaaatt-caaaataatccatgattgtgcacttcgttagtcaaaatagtc 102  Q
    ||||||||| || ||| | ||||| |||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  81330 agccacaatagtatctgattgtattgaaatttcaaaatagtttatgattgtgcacttcgttagtcaaaatagtc 81403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 1622 - 1688
Alignment:
Q  40 gtctctcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctct 105  Q
    |||| |||||||||| |||||  ||||||||   ||||||||||||||||| |||||||||||||||    
T  1622 gtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctct 1688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 27111 - 27153
Alignment:
Q  62 aaaataatccatgattgtgcacttcgttagtcaaaatagtctc 104  Q
    |||||||||  |||||||||||||||||| |||||||||||||    
T  27111 aaaataatctttgattgtgcacttcgttaatcaaaatagtctc 27153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 6246 - 6318
Alignment:
Q  45 tcaatgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 116  Q
    |||||||||| |||||  |||||| |||  ||||||| ||| |||| ||||||||||||| ||||||||||||    
T  6246 tcaatgtatcaaaattttaaaatagtcctagattgtgaactccgttggtcaaaatagtctttgacgttaaaat 6318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 89314 - 89251
Alignment:
Q  59 ttcaaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccct 123  Q
    ||||||||| ||  ||||||||||||| | || ||||| ||||| ||||||||||||||||||||    
T  89314 ttcaaaatagtcattgattgtgcactttgctaatcaaa-tagtcactgacgttaaaatagtccct 89251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 109324 - 109249
Alignment:
Q  48 atgtatcgaaattc-aaaataatccatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaatagtccct 123  Q
    |||||||||||||  |||||| ||  ||| ||||||||| | |||||||| ||||| ||||||||||||||||||||    
T  109324 atgtatcgaaattttaaaatagtcattgaatgtgcactttgctagtcaaa-tagtcactgacgttaaaatagtccct 109249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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