View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2779_high_14 (Length: 262)

Name: NF2779_high_14
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2779_high_14
NF2779_high_14
[»] chr3 (2 HSPs)
chr3 (1-246)||(38218782-38219029)
chr3 (1-246)||(38214563-38214808)
[»] chr8 (2 HSPs)
chr8 (126-234)||(42990746-42990854)
chr8 (130-238)||(35016335-35016443)
[»] chr4 (5 HSPs)
chr4 (122-192)||(53501885-53501955)
chr4 (134-239)||(53494729-53494834)
chr4 (140-239)||(53492401-53492500)
chr4 (137-247)||(53489558-53489668)
chr4 (140-239)||(53498715-53498814)
[»] chr2 (2 HSPs)
chr2 (152-247)||(16941457-16941552)
chr2 (152-247)||(17012122-17012217)
[»] chr7 (1 HSPs)
chr7 (152-239)||(37188363-37188450)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38218782 - 38219029
Alignment:
Q  1 acaaaaatattctcata--aaagcttttgatatcgtgtagaagctattttaattaaagttgcttttggaatagaaagaatatatgatatgctaaatgagg 98  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218782 acaaaaatattctcatataaaagcttttgatatcgtgttgaagctattttaattaaagttgcttttggaatagaaagaatatatgatatgctaaatgagg 38218881  T
Q  99 aagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctacc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38218882 aagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctacc 38218981  T
Q  199 aaataaatactctttcttggattgaaagccagagccagaggttttatc 246  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  38218982 aaataaatactctttcttggattggaagccagagccagaagttttatc 38219029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38214563 - 38214808
Alignment:
Q  1 acaaaaatattctcataaaagcttttgatatcgtgtagaagctattttaattaaagttgcttttggaatagaaagaatatatgatatgctaaatgaggaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38214563 acaaaaatattctcataaaagcttttgatatcgtgttgaagctattttaattaaagttgctttcggaatagaaagaatatatgatatgctaaatgaggaa 38214662  T
Q  101 gtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaa 200  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38214663 gtaaagaaaggaataaaaaatgaagtacatacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaa 38214762  T
Q  201 ataaatactctttcttggattgaaagccagagccagaggttttatc 246  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||    
T  38214763 ataaatactctttcttggattggaagccagagccagaagttttatc 38214808  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 42990854 - 42990746
Alignment:
Q  126 tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaa 225  Q
    ||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| || ||    
T  42990854 tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccagtttgagttgcatatcaattctaccgaataagtactctttcttggactggaa 42990755  T
Q  226 gccagagcc 234  Q
    |||||||||    
T  42990754 gccagagcc 42990746  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 35016443 - 35016335
Alignment:
Q  130 tacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagcca 229  Q
    ||||||||||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| |||||||  |||||| |||| ||||  ||||||    
T  35016443 tacgtagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagcca 35016344  T
Q  230 gagccagag 238  Q
    |||||||||    
T  35016343 gagccagag 35016335  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 53501955 - 53501885
Alignment:
Q  122 gaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaat 192  Q
    ||||||| |||||| || ||||| ||||| |||||||| |||||||  |||||||||||||||||||||||    
T  53501955 gaagtacttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat 53501885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 53494834 - 53494729
Alignment:
Q  134 tagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagc 233  Q
    ||||||||||| || ||||| ||||| |||||||  ||||| ||||| |||||||||||  | ||||| | ||| || |||||||||||||| ||||| |    
T  53494834 tagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaatgttgccaaagagatattcattcttggattgaaatccagaac 53494735  T
Q  234 cagagg 239  Q
    ||||||    
T  53494734 cagagg 53494729  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 53492500 - 53492401
Alignment:
Q  140 gcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagagg 239  Q
    ||||| ||||| |||||||| || |||| ||||||||| ||||||||||||||| | ||||| |  || || || |||||||||||||| || |||||||    
T  53492500 gcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagcctgaaccagagg 53492401  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 53489558 - 53489668
Alignment:
Q  137 taagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccag 236  Q
    |||||||| || || ||||| |||||||||| ||||||||| | |||||| |||||  | ||| | | ||| |  || ||||||||||||||||||||||    
T  53489558 taagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccagagccag 53489657  T
Q  237 aggttttatct 247  Q
    ||||| |||||    
T  53489658 aggttctatct 53489668  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 53498814 - 53498715
Alignment:
Q  140 gcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagagg 239  Q
    ||||| ||||| |||||||| ||||| | |||||| || |  |||||||||||| | |||||||| || || || |||||||||||||| || |||||||    
T  53498814 gcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagcctgaaccagagg 53498715  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 16941552 - 16941457
Alignment:
Q  152 ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatct 247  Q
    |||||||| || ||||| ||||||||||||||||| |||||| | ||||| || ||||| |  |||||  |||||||||||||||| | |||||||    
T  16941552 ccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatct 16941457  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 17012217 - 17012122
Alignment:
Q  152 ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatct 247  Q
    |||||||| || ||||| ||||||||||||||||| |||||| | ||||| || ||||| |  |||||  |||||||||||||||| | |||||||    
T  17012217 ccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatct 17012122  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 37188450 - 37188363
Alignment:
Q  152 ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagagg 239  Q
    |||||||| || |||| ||||||||| || |||||||||||| | ||||| |  || || || ||||||||||| |||||||||||||    
T  37188450 ccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaaccagagccagagg 37188363  T

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