View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_high_19 (Length: 249)
Name: NF2779_high_19
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11484817 - 11484576
Alignment:
| Q |
1 |
ttcatatcaggaagtgcagtaccgattggataaagtaaggccaactgatatatttgttgggtttgttgcaagttgtcattgtcattgtccttgttattta |
100 |
Q |
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| T |
11484817 |
ttcatatcaggaagtgcagtaccgattggataaagtaaggccaactgatacatttgttgggtttgttgcaagttgtcattgtcattgtccttgttattta |
11484718 |
T |
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| Q |
101 |
aggtagctgtgtcttgaggaggaatttcatgttgtttttcaatacgatgagtggcttcttgttgttcaagagggacagtgactattgtgtcattattgtt |
200 |
Q |
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| T |
11484717 |
aggtagctgtgtcttgaggaggaatttcatgttgtttttcaatacgatgagtggcttcttgttgttcaagagggacagtgactattgtgtcattattgtt |
11484618 |
T |
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| Q |
201 |
taaggttatgtcgtgaatacttcttctctttttcttcttctc |
242 |
Q |
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| T |
11484617 |
taaggttatgtcgtgaatacttcttctctttttcttcttctc |
11484576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 38166777 - 38166699
Alignment:
| Q |
163 |
tgttcaagagggacagtgactattgtgtcattattgtttaaggttatgtcgtgaatacttcttctctttttcttcttct |
241 |
Q |
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| T |
38166777 |
tgttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaatactttttctctttttctccttct |
38166699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 38173103 - 38173181
Alignment:
| Q |
163 |
tgttcaagagggacagtgactattgtgtcattattgtttaaggttatgtcgtgaatacttcttctctttttcttcttct |
241 |
Q |
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| T |
38173103 |
tgttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaatactttttctctttttctccttct |
38173181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 38200327 - 38200405
Alignment:
| Q |
163 |
tgttcaagagggacagtgactattgtgtcattattgtttaaggttatgtcgtgaatacttcttctctttttcttcttct |
241 |
Q |
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| T |
38200327 |
tgttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaatactttttctctttttctccttct |
38200405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 11491502 - 11491422
Alignment:
| Q |
162 |
ttgttcaagagggacagtgactattgtgtcattattgtttaaggttatgtcgtgaatacttcttctctttttcttcttctc |
242 |
Q |
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|||||||| || || |||||||| |||| |||| |||||||||||| |||| || || ||||||||||||||| ||||||| |
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| T |
11491502 |
ttgttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtcatgtatgcttcttctctttttcctcttctc |
11491422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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