View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_high_20 (Length: 248)
Name: NF2779_high_20
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 50012318 - 50012110
Alignment:
| Q |
18 |
gatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttnnnnnnnnnnnnnnnnnnnntca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
50012318 |
gatattacagggatgaacattttgatttaacttgctcaaaaatatattgaagttgctcaaaatttcaatctttatttaaaaaaagaagaaaaaaaaatca |
50012219 |
T |
|
| Q |
118 |
atctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagagggaggaatgaaaaagaaatat |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50012218 |
atctttaatatttggaaaacacttgcccacgttacattagaaagaagaacatatgtatttcttaagctcttttagagagggaggaatgaaaaagaaatat |
50012119 |
T |
|
| Q |
218 |
aaacaggtt |
226 |
Q |
| |
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||||||||| |
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| T |
50012118 |
aaacaggtt |
50012110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 21444140 - 21444345
Alignment:
| Q |
18 |
gatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttnnnnnnnnnnnnnnnnnnnntca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21444140 |
gatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttaaaaaaagaaaaaaaaa---tca |
21444236 |
T |
|
| Q |
118 |
atctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagagggaggaatgaaaaagaaatat |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21444237 |
atctttaatatttggaaaacacttgcccacgttacttcagaaagaagaacatgtgtatttcttaagctcttttagagagagaggaatgaaaaagaaatat |
21444336 |
T |
|
| Q |
218 |
aaacaggtt |
226 |
Q |
| |
|
||||||||| |
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|
| T |
21444337 |
aaacaggtt |
21444345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 42066494 - 42066288
Alignment:
| Q |
18 |
gatattacagggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttnnnnnnnnnnnnnnnnnnnn-tc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42066494 |
gatattacatggatgaacattttgatttaacttgctcaaaaacatattgaagttgctcaaaatttcaatctttatttaaaaaaagaagaaaaaaaaaatc |
42066395 |
T |
|
| Q |
117 |
aatctttaatatttgaaaaacacttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagagggaggaatgaaaaagaaata |
216 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066394 |
aatctttaatatttggaaaacatttgcccacgttacattagaaagaagaacatgtgtatttcttaagctcttttagagagggaggaatgaaaaagaaata |
42066295 |
T |
|
| Q |
217 |
taaacag |
223 |
Q |
| |
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||||||| |
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|
| T |
42066294 |
taaacag |
42066288 |
T |
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