View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2779_high_4 (Length: 370)

Name: NF2779_high_4
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2779_high_4
NF2779_high_4
[»] chr1 (19 HSPs)
chr1 (1-362)||(13094583-13094944)
chr1 (1-362)||(13130012-13130373)
chr1 (1-362)||(13161705-13162066)
chr1 (1-267)||(13007384-13007650)
chr1 (5-311)||(13101188-13101494)
chr1 (5-268)||(13069917-13070180)
chr1 (5-311)||(19727341-19727647)
chr1 (5-294)||(13204647-13204936)
chr1 (4-270)||(30367847-30368113)
chr1 (110-225)||(13244302-13244417)
chr1 (11-225)||(13271780-13271997)
chr1 (11-222)||(19278952-19279166)
chr1 (130-312)||(13214132-13214314)
chr1 (16-270)||(13064952-13065206)
chr1 (8-77)||(13086298-13086367)
chr1 (126-209)||(12963708-12963791)
chr1 (120-230)||(13080641-13080751)
chr1 (19-81)||(13080793-13080855)
chr1 (11-81)||(12963803-12963873)
[»] chr6 (1 HSPs)
chr6 (128-225)||(31396459-31396557)
[»] chr7 (2 HSPs)
chr7 (6-60)||(12164462-12164516)
chr7 (6-60)||(12175987-12176041)
[»] chr8 (1 HSPs)
chr8 (6-60)||(36668314-36668368)
[»] chr4 (1 HSPs)
chr4 (6-60)||(3321496-3321550)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 13094583 - 13094944
Alignment:
Q  1 acagatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagta 100  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13094583 acagatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagta 13094682  T
Q  101 atccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactga 200  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13094683 atccgataatcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactga 13094782  T
Q  201 gagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctt 300  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13094783 gagctgaactaattgtaccatttccggcaaatatcatagtaaatgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcattctt 13094882  T
Q  301 tagggcttttaccatgcctaaaaagcattggtgcatttcttcattgctgcacttcctttgct 362  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||    
T  13094883 tagggcttttaccatgcctaaaaaacattggtacatttcttcatagctgcacttactttgct 13094944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 13130012 - 13130373
Alignment:
Q  1 acagatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagta 100  Q
    |||||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13130012 acagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagatccacatgcctcaaagta 13130111  T
Q  101 atccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactga 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130112 atccgattaccctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactga 13130211  T
Q  201 gagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctt 300  Q
    ||||||||| ||||| ||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  13130212 gagctgaactaattgaaccatttccggcaaaaaacatagtaaatgcagtatctctaagatacttctcactgatttcaccctttccatatccttcattctt 13130311  T
Q  301 tagggcttttaccatgcctaaaaagcattggtgcatttcttcattgctgcacttcctttgct 362  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||    
T  13130312 tagggcttttaccatgcctaaaaaacattggtccatttcttcatcgctgcacttgctttgct 13130373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 13161705 - 13162066
Alignment:
Q  1 acagatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagta 100  Q
    |||||||||||||||||||| ||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13161705 acagatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaagaaccacatccctcaaaata 13161804  T
Q  101 atccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactga 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13161805 atccgattatcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactga 13161904  T
Q  201 gagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctt 300  Q
    ||||||||| ||||| ||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  13161905 gagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtatctctaagatacttctcactgatttccccctttccatatccttctttctt 13162004  T
Q  301 tagggcttttaccatgcctaaaaagcattggtgcatttcttcattgctgcacttcctttgct 362  Q
    |||||||||||||||||||||||| ||||||| ||||||||| |||||||| || |||||||    
T  13162005 tagggcttttaccatgcctaaaaaacattggtccatttcttcgttgctgcatttgctttgct 13162066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13007384 - 13007650
Alignment:
Q  1 acagatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagta 100  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |    
T  13007384 acagatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggtacactagcttatcaagatccacatctctcaaagga 13007483  T
Q  101 atccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactga 200  Q
     || |||| |||||||||||   ||| ||||||||||| |||||||| |||||  ||||||||||||||| |||||||| ||||||||||||||||||||    
T  13007484 gtctgattctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactga 13007583  T
Q  201 gagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctc 267  Q
    || |||||| |||||| |||||||| || || |  | ||| ||  || |||||||||||||||||||    
T  13007584 gacctgaactaattgtgccatttcctgctaaaaagagagtgaggacattgtctctaagatacttctc 13007650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 13101188 - 13101494
Alignment:
Q  5 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 104  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||| ||| ||| ||||     
T  13101188 atatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggtacactagcttatcaagatactcatctctcgaaggaatct 13101287  T
Q  105 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagc 204  Q
    |||| |||||||||||    || ||||||||||| |||||||| |||||  ||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  13101288 gattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagc 13101387  T
Q  205 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctttagg 304  Q
    ||||| || ||  |||||||| || || |  | ||| | | || ||||||||||||||||||||   ||||| |||||||||  |||||| ||| ||||     
T  13101388 tgaactaactgggccatttcctgctaaaaagagagtgattacattgtctctaagatacttctcatccatttccccctttccagatccttccttcgttagt 13101487  T
Q  305 gctttta 311  Q
    |||||||    
T  13101488 gctttta 13101494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 13070180 - 13069917
Alignment:
Q  5 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 104  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||| ||| ||| | ||     
T  13070180 atatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctccatgaaggtacactagattatcaagatccacatctctccaaggagtct 13070081  T
Q  105 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagc 204  Q
    |||| |||||||||||   ||| |||||||| || |||||||| |||||  ||||||||||||||| |||||||| |||||||||||||||||||||| |    
T  13070080 gattctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacc 13069981  T
Q  205 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctca 268  Q
    ||||  || ||| |||||||| || || |  | ||  |||||| ||||||||||||||||||||    
T  13069980 tgaagtaactgtgccatttcctgctaaaaagagagagagtgcattgtctctaagatacttctca 13069917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 19727341 - 19727647
Alignment:
Q  5 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||||||||||| ||||||| | ||     
T  19727341 atatgctcaaaaggtacaggaggataaagtctcaaggcttaacatagatctccgtggaggtacactagcttatcaagatccacatctctcaaaggagtct 19727440  T
Q  105 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagc 204  Q
    | || |||||||||||   ||| ||||||||||| |||||||| |||||  |||| |||||||||| ||| |||| |||||| ||||||||||||||| |    
T  19727441 ggttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacc 19727540  T
Q  205 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctttagg 304  Q
    || || || ||  |||||||| || || |  | ||| |||  | |||||||||||||||||||| | ||||| |||||||||  |||||| ||| ||||     
T  19727541 tgtactaactgggccatttcctgctaaaaagagagtgagtaaattgtctctaagatacttctcattcatttccccctttccagatccttccttcattagt 19727640  T
Q  305 gctttta 311  Q
    |||||||    
T  19727641 gctttta 19727647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 13204647 - 13204936
Alignment:
Q  5 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatcc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||| ||| ||| ||||     
T  13204647 atatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatgaaggtacactagcttatcaagatactcatctctcgaaggaatct 13204746  T
Q  105 gattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagc 204  Q
    |||| |||||||||||    || ||||||||||| |||||||| |||||  ||||||||||||||| ||| |||| |||||| ||||||||||| ||| |    
T  13204747 gattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacc 13204846  T
Q  205 tgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttc 294  Q
    ||||| |  || |||| |||| || || |  | ||  |||| |  |||||||||| ||||| |||| |||||| ||||||||| ||||||    
T  13204847 tgaactagctggaccacttcctgctaagaagagagagagtgtatcgtctctaagaaacttcccactcatttcttcctttccatatccttc 13204936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 30368113 - 30367847
Alignment:
Q  4 gatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatc 103  Q
    |||| ||||||||||||||| |||||| |  |||| || |||||||||||||||||||||||| ||||||||||||||     |  || |  |||| |||    
T  30368113 gataagctcaaaaggtacagtaggatacaacctcatggattcacatatagctccatggaggtagactagcttatcaaggctttccaccattgaagttatc 30368014  T
Q  104 cgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagag 203  Q
    | ||| || | || || ||  ||||||||||||||||||||||| |||||  ||||||||||||||| |||||||| ||||||||||||||||||||||     
T  30368013 caattctcatgttttgatacacaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagac 30367914  T
Q  204 ctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcact 270  Q
     ||||| || ||| ||||| || || || |  | ||  |||||| ||||||||||||||||||||||    
T  30367913 ttgaactaagtgtgccattacctgctaacaaaagagagagtgcattgtctctaagatacttctcact 30367847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 13244417 - 13244302
Alignment:
Q  110 tcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 209  Q
    |||||||||||||  ||||||||||||||||||||||| |||||  ||||| ||||||||| |||||||| |||||| || |||||||| ||| ||||||    
T  13244417 tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 13244318  T
Q  210 caattgtaccatttcc 225  Q
     |||||| ||||||||    
T  13244317 taattgttccatttcc 13244302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 13271780 - 13271997
Alignment:
Q  11 tcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagta---atccgat 107  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||| |||| ||||| |  ||||||||||  |   || |  | ||| ||   |||  ||    
T  13271780 tcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaatgttttcaacatttaaattattgatcaaat 13271879  T
Q  108 tatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctga 207  Q
    | |||||||||||||  |||| |||||||||||||||||| | |||| |||||||| |||||| |||||||| |||||| || |||||||| ||| ||||    
T  13271880 tctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacctga 13271979  T
Q  208 accaattgtaccatttcc 225  Q
    || || ||| ||||||||    
T  13271980 actaactgttccatttcc 13271997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 19279166 - 19278952
Alignment:
Q  11 tcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaa---gtaatccgat 107  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||||| || || |||||||||||||| ||     | || |||   || |||  ||    
T  19279166 tcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttcacactaaaatttgtgatcaaat 19279067  T
Q  108 tatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctga 207  Q
    ||||||||| |||||| || ||| | |||||||||||||| |||||| |||| |||||||||| |||||| |  ||||| || |||||| ||||| | ||    
T  19279066 tatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccga 19278967  T
Q  208 accaattgtaccatt 222  Q
    || |||||| |||||    
T  19278966 actaattgttccatt 19278952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 13214132 - 13214314
Alignment:
Q  130 atctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggca 229  Q
    |||||| || |||||||| |||||  ||||||||||| ||| |||||||| |||||||||||||||| ||||| |||||| || ||  |||||||| ||     
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgct 13214231  T
Q  230 aatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctttagggcttttac 312  Q
    || |  | ||| |  ||| ||||||||||||||||||||   ||||| |||||||||  |||||| ||| |||| ||||||||    
T  13214232 aaaaagagagtgatcgcattgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttac 13214314  T

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Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 13065206 - 13064952
Alignment:
Q  16 aggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctct 115  Q
    |||||||||||||||||| || |||||||||||||||||||| |||||||| | ||| |||||||| |   |  |  |  ||||||||   || || ||     
T  13065206 aggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaattagtttatcaagcttttccacaattgaagtaatcaagttttcatca 13065107  T
Q  116 tgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattg 215  Q
    |  | ||  ||||||||||| ||||||||||| || ||  ||||||||| ||||| |  ||||| |||||| || |||||||||||| |||||| || ||    
T  13065106 tcagatagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactg 13065007  T
Q  216 taccatttccggcaaatatcatagtaagtgcagtgtctctaagatacttctcact 270  Q
    | || ||||| || || |  | | | | |||||||||||||||||||||||||||    
T  13065006 tgccgtttcccgctaacaatagattgactgcagtgtctctaagatacttctcact 13064952  T

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Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13086298 - 13086367
Alignment:
Q  8 tgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttat 77  Q
    |||| ||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||    
T  13086298 tgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttat 13086367  T

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Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 12963791 - 12963708
Alignment:
Q  126 aattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 209  Q
    |||||||||| ||||||||||| |||||   |||||||||||||| |||||||| |||||| || |||||||| ||| ||||||    
T  12963791 aattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 12963708  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 13080751 - 13080641
Alignment:
Q  120 ttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtacc 219  Q
    |||| ||||||||||||||||||||||| |||||  | || ||  ||||||  |||||||  ||||| ||||||||| ||||| ||| || |||||| ||    
T  13080751 ttaaacaattatctttgatctcttgaataattttaccatctaccctaggatgcgttgaaaccagccaaaaaaaccaagtgagacctgtactaattgttcc 13080652  T
Q  220 atttccggcaa 230  Q
    |||||| ||||    
T  13080651 atttcctgcaa 13080641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 13080855 - 13080793
Alignment:
Q  19 tacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaag 81  Q
    ||||| |||||| || || |||||||||||||| |||||||| ||||| ||||||||||||||    
T  13080855 tacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaag 13080793  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 12963873 - 12963803
Alignment:
Q  11 tcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatggaggtatactagcttatcaag 81  Q
    ||||| |||| |||||||||||| || || |||||||| ||||||||||| || || || |||||||||||    
T  12963873 tcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaag 12963803  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 31396557 - 31396459
Alignment:
Q  128 ttatctttgatctcttgaatgattttttcttccacaataggataagttgaaag-aagccagaaaaaccaactgagagctgaaccaattgtaccatttcc 225  Q
    |||||||  ||||||||||| |||||  |||||||| |||||| ||||||||  ||||||||||||||||| ||||  ||||| |||||| ||||||||    
T  31396557 ttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcc 31396459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 12164462 - 12164516
Alignment:
Q  6 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 60  Q
    |||||||||||||||  || |||||||| |||||||||||||||| |||||||||    
T  12164462 tatgctcaaaaggtatcggcggataaagcctcaaggcttcacataaagctccatg 12164516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 12175987 - 12176041
Alignment:
Q  6 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 60  Q
    ||||||| ||||| || ||||||||||| |||||||||||||||| |||||||||    
T  12175987 tatgctctaaaggaaccggaggataaagcctcaaggcttcacataaagctccatg 12176041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 36668314 - 36668368
Alignment:
Q  6 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 60  Q
    |||||||||||||||  || |||||||| || ||||||||||||| |||||||||    
T  36668314 tatgctcaaaaggtattggtggataaagccttaaggcttcacataaagctccatg 36668368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 3321550 - 3321496
Alignment:
Q  6 tatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatg 60  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||| |||| ||||    
T  3321550 tatgctcaaaagggacaggtggataaagtcttaaggattcacataaagctgcatg 3321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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