View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_1 (Length: 485)
Name: NF2779_low_1
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 49538916 - 49538455
Alignment:
| Q |
19 |
aaggaagtgtaatgtcgtgattctattgatgaatttattgggaactcttgagttggtttaagatttcattttgcttttggtgtttggttggaggcagcgg |
118 |
Q |
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| T |
49538916 |
aaggaagtgtaatgtcgtgattctattgatgaatttattgggaactcttgagttggtttaagatttcattttgcttttggtgtttggttggaggcagcgg |
49538817 |
T |
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| Q |
119 |
cttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtgctctagtcaattaactaagcataat |
218 |
Q |
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| T |
49538816 |
cttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtgctctagtcaattaactaagcataat |
49538717 |
T |
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| Q |
219 |
caaatcctccactagtaacctagtaaagtcacaatgtaagtcatatacatttttaatctagaccactacaaggaaaaagggtagtaaagtaacataactt |
318 |
Q |
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| T |
49538716 |
caaatcctccactagtaacctagtatattcacaatgtaagtcatatacatttttaatctagaccactacaaggaaaaagggtagtaaagtaacataactt |
49538617 |
T |
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| Q |
319 |
tgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattgacattttcaagcatatcacaatactttacattttcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49538616 |
tgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattgacattttcaagcatatcacaatactttacatttt-c |
49538518 |
T |
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| Q |
419 |
cttttgccacccgtctttcttattcacactcattctcatctactccatcctttcttctcactc |
481 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49538517 |
cttttgccactcgtctttcttattcacactcattctcatctactccatcctttcttttcactc |
49538455 |
T |
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