View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2779_low_10 (Length: 325)

Name: NF2779_low_10
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2779_low_10
NF2779_low_10
[»] chr2 (2 HSPs)
chr2 (1-314)||(5899136-5899449)
chr2 (71-144)||(2126847-2126920)
[»] chr6 (1 HSPs)
chr6 (77-145)||(30582965-30583033)
[»] chr1 (4 HSPs)
chr1 (77-148)||(35459480-35459551)
chr1 (77-145)||(14128887-14128955)
chr1 (77-144)||(7034711-7034780)
chr1 (110-162)||(1233252-1233304)
[»] chr8 (1 HSPs)
chr8 (76-122)||(28137133-28137179)
[»] chr4 (1 HSPs)
chr4 (86-142)||(52063175-52063231)
[»] chr7 (1 HSPs)
chr7 (84-141)||(41364691-41364748)
[»] chr5 (1 HSPs)
chr5 (78-115)||(38845235-38845272)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 5899136 - 5899449
Alignment:
Q  1 tcaaaagtttagtttgctggcaagttttatccttcagcaaatgacaacttcagatgccattgctccatggtagttcatgtttggattcaattttgggaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5899136 tcaaaagtttagtttgctggcaagttttatccttcagcaaatgacaacttcagatgccattgctccatggtagttcatgtttggattcaattttgggaga 5899235  T
Q  101 gttaaaagtgattctgaagactaaaaaatgattttggtatgtttggagtttcttgattagaaattatcctaacttgaagttaaaaattgtagcttttgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5899236 gttaaaagtgattctgaagactaaaaaatgattttggtatgtttggagtttcttgattagaaattatcctaacttgaagttaaaaattgtagcttttgcc 5899335  T
Q  201 tcgaaaacgtgagctttacacacaaacttatttattgttcaactcacttttaactaaaatcatttttcgttggcgtaggaacaaacacgcattgttgtcc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5899336 tcgaaaacgtgagctttacacacaaacttatttattgttcaactcacttttaactaaaatcatttttcgttggcgtaggaacaaacacgcgttgttgtcc 5899435  T
Q  301 ttgttcactttcat 314  Q
    ||||||||||||||    
T  5899436 ttgttcactttcat 5899449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 2126847 - 2126920
Alignment:
Q  71 tagttcatgtttggattcaattttgggagagttaaaagtgattctgaagactaaaaaatgattttggtatgttt 144  Q
    |||| |||||||||||||| ||||||||| || |||| ||||| |||||||| |||| | ||||| ||||||||    
T  2126847 tagtacatgtttggattcacttttgggagcgtcaaaaatgattatgaagacttaaaattaattttagtatgttt 2126920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 30583033 - 30582965
Alignment:
Q  77 atgtttggattcaattttgggagagttaaaagtgattctgaagactaaaaaatgattttggtatgtttg 145  Q
    |||||| |||||| ||||||| ||| ||||||||||||||||||  ||||| ||||||| |||||||||    
T  30583033 atgttttgattcacttttgggggagctaaaagtgattctgaagataaaaaattgatttttgtatgtttg 30582965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 35459480 - 35459551
Alignment:
Q  77 atgtttggattcaattttgggagagttaaaagtgattctgaagactaaaaaatgattttggtatgtttggag 148  Q
    ||||||||||||| ||||| ||||||  ||||||||||| || ||| |||| |||||||| |||||||||||    
T  35459480 atgtttggattcacttttgagagagtctaaagtgattctaaaaacttaaaattgattttgttatgtttggag 35459551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 14128955 - 14128887
Alignment:
Q  77 atgtttggattcaattttgggagagttaaaagtgattctgaagactaaaaaatgattttggtatgtttg 145  Q
    ||||||||||||| |||||||||| | |||||||||| |||| ||| || | ||||||| |||||||||    
T  14128955 atgtttggattcacttttgggagattcaaaagtgattatgaaaacttaacattgattttagtatgtttg 14128887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 7034780 - 7034711
Alignment:
Q  77 atgtttggattcaattttgggagagttaaaagtgattctgaagac-taaaaaatga-ttttggtatgttt 144  Q
    ||||||||||||| |||||||||||   ||||||||| ||||||| |||||| ||| |||||||||||||    
T  7034780 atgtttggattcagttttgggagaggcgaaagtgattttgaagacttaaaaattgatttttggtatgttt 7034711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 1233252 - 1233304
Alignment:
Q  110 gattctgaagactaaaaaatgattttggtatgtttggagtttcttgattagaa 162  Q
    ||||||||||||  |||| ||||||||||||||||| |  |||||||||||||    
T  1233252 gattctgaagacataaaattgattttggtatgtttgaatgttcttgattagaa 1233304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 28137179 - 28137133
Alignment:
Q  76 catgtttggattcaattttgggagagttaaaagtgattctgaagact 122  Q
    |||||||||||||| ||||| |||||| |||||||||||||||||||    
T  28137179 catgtttggattcacttttgagagagtaaaaagtgattctgaagact 28137133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 52063231 - 52063175
Alignment:
Q  86 ttcaattttgggagagttaaaagtgattctgaagactaaaaaatgattttggtatgt 142  Q
    |||||||||| |||||| |||||||||||| |||||| | || ||||||||||||||    
T  52063231 ttcaattttgtgagagtcaaaagtgattctaaagacttacaattgattttggtatgt 52063175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 41364748 - 41364691
Alignment:
Q  84 gattcaattttgggagagttaaaagtgattctgaagactaaaaaatgattttggtatg 141  Q
    ||||||||||| | |||| ||||||||||| |||||| | |||| |||||||||||||    
T  41364748 gattcaattttagaagagctaaaagtgattatgaagaattaaaattgattttggtatg 41364691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 38845235 - 38845272
Alignment:
Q  78 tgtttggattcaattttgggagagttaaaagtgattct 115  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  38845235 tgtttggattcatttttgggagagtcaaaagtgattct 38845272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University