View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_11 (Length: 312)
Name: NF2779_low_11
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 146 - 298
Target Start/End: Original strand, 40595608 - 40595760
Alignment:
| Q |
146 |
tctgagacagacattatttgatgcaaaataaatagtcatagaagcaaattattaaactagatttatatagaaagtagtaagaaaatcaacctcttcttgc |
245 |
Q |
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| T |
40595608 |
tctgagacagacattatttaatgcaaaataaatagtcatagaagcaaatcattaaactagatttatatagaaagtagtaagaaaatcaacctcttcttgc |
40595707 |
T |
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| Q |
246 |
atgaacataagctttgctttattctgctgataatctggccgcaaagaaacacc |
298 |
Q |
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| T |
40595708 |
atgaacataagctttgctttattctgctgataatctggccgcaaagaaacacc |
40595760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40595471 - 40595575
Alignment:
| Q |
1 |
agagagtgatacataaccaatttatttatctttgcaacttaaccttgtcagaaattaaaacttgctactttttgcagtgcacacaacagcataaaggcat |
100 |
Q |
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| T |
40595471 |
agagagtgatacataaccaatttatttatctttgcaacttaaccttgtcagaaattaaaacttgctactttttgcagtgcacacaacagcataaaggcat |
40595570 |
T |
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| Q |
101 |
ttggc |
105 |
Q |
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| T |
40595571 |
ttggc |
40595575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 40595437 - 40595470
Alignment:
| Q |
115 |
atgcaaagatataatttgtttcctcatgctctct |
148 |
Q |
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| T |
40595437 |
atgcaaagatataatttgtttcctcatgctctct |
40595470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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