View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_12 (Length: 305)
Name: NF2779_low_12
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_12 |
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| [»] scaffold1118 (2 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: scaffold1118 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 973 - 1184
Alignment:
| Q |
20 |
caagaaaatctgtgaagaatcaa-ggaaaacacaggaaaaaccacgaagaaaattgatgaaggttcaaggaaaaccaatgaagattcaaggaaaattaat |
118 |
Q |
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| T |
973 |
caagaaaatcggtgacgaatcaaaggaaaaaacaggaaaacctgcaaagaaaattgacgaacgttcaaggaaaaacgatgaagattcaaggaaaattgat |
1072 |
T |
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| Q |
119 |
gaagaatgaacttgtaacta----ctaac------tctccatggaaatgagagagcctcaatgataccatgttatgggaaataaaagatagaaaacaaac |
208 |
Q |
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| T |
1073 |
gaagaatgaatttgtaactaacttctaacgaactttctccgtggaaatgagagaggctcaatgataccatgtcatgggaattaaaagatagaatacaaac |
1172 |
T |
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| Q |
209 |
tcatttctcata |
220 |
Q |
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|||||||||||| |
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| T |
1173 |
tcatttctcata |
1184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 1222 - 1274
Alignment:
| Q |
225 |
gcatgagatacacaacacctaattacatgctaatgaagtggagtaagctaatt |
277 |
Q |
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| T |
1222 |
gcattagatacacaacacctaattacatgctaatgaagtggattaaactaatt |
1274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 1118 - 1162
Alignment:
| Q |
238 |
aacacctaattacatgctaatgaagtggagtaagctaatttctta |
282 |
Q |
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| T |
1118 |
aacacctaattacatgctaatgaagtggagtaagctaatttctta |
1162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 40904352 - 40904324
Alignment:
| Q |
192 |
aaagatagaaaacaaactcatttctcata |
220 |
Q |
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| T |
40904352 |
aaagatagaaaacaaactcatttctcata |
40904324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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