View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_13 (Length: 305)
Name: NF2779_low_13
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 4292490 - 4292707
Alignment:
| Q |
11 |
cacagaagaagccctaagaaatcttgacgtgccaatgagtagttgcagtaatgagtgagctgcaacggccacagaaaccccaacaagaaatctgcccaaa |
110 |
Q |
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| T |
4292490 |
cacagaagaagccctaagaaatcttgacgtgccaatgagtagttgcagtaatgagtgagctgcaacggccacagaaaccccgacaagaaatctgcccaaa |
4292589 |
T |
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| Q |
111 |
gacaaaaattagaaacctacattttaatataaaactaaactaataaaaagctaattaagaccattttcaagtgatacttggttttgctgtgttttcaacc |
210 |
Q |
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| T |
4292590 |
gataaaaatcagaaacctacattttaatataaaactaaactaataaaaagctaattaagaccattttcaagtgatacttggttttgctgtgttttcaacc |
4292689 |
T |
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| Q |
211 |
gacttgacttcacaaata |
228 |
Q |
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| T |
4292690 |
gacttgacttcacaaata |
4292707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 4292771 - 4292834
Alignment:
| Q |
224 |
aaatagttttaataatgtcataatttatgattaattggtaatataaagtctttacataggacct |
287 |
Q |
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| T |
4292771 |
aaatagttttaataatgtcataattcatgattaattggtaatataaagtctttacataggacct |
4292834 |
T |
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