View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_14 (Length: 300)
Name: NF2779_low_14
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 13854987 - 13855255
Alignment:
| Q |
12 |
atgaatgcgaagggggtgagatggaggttgtattggtgtagactagagttgtttgagtgggaaaaggagaggctccttgagcttttgggacggttggaag |
111 |
Q |
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| T |
13854987 |
atgaatgcggagggggtgagatggaggttgtattggcgtagactagagttgtttgagtgggaaaaggagaggctccttgagcttttgggacggttggaag |
13855086 |
T |
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| Q |
112 |
gggtggtcctaaggtaccgggcggatatttgggtgtggaaaccggataaagagggagttttttccgttaattcttgctattttctacttcgaaatttgag |
211 |
Q |
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| T |
13855087 |
gggtggtcctaaggtactgggcggatatttgggtgtggaaaccggataaagagggagttttttctgttaattcttgctattttctacttcaaaatttgag |
13855186 |
T |
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| Q |
212 |
gcttttagaagatcagttgagctatgaggaggaagttattttccgggagttgtggaagagtaaggcgcc |
280 |
Q |
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| T |
13855187 |
gcttttagaagatcggttgagctatgaggaggaagttattttccgtgagttatggaagagtaaggcgcc |
13855255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 26490130 - 26490350
Alignment:
| Q |
56 |
agagttgtttgagtgggaaaaggagaggctccttgagcttttgggacggttggaaggggtggtcctaaggtaccgggcggatatttgggtgtggaaaccg |
155 |
Q |
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| T |
26490130 |
agagttgtttgaatgggaaaaggagaggtttattgggcttttgggtcggttggaaggggtggtgctaaggaacctaccggatatttgggtgtggaaatcg |
26490229 |
T |
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| Q |
156 |
gataaagagggagttttttccgttaattcttgctattttctacttcgaaatttgaggcttttagaagatcagttgagctatgaggaggaagttattttcc |
255 |
Q |
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| T |
26490230 |
ggtaaagagggagtgttttccgttcattcttgctatttattacttcaaaatttgaggcctttanaa---cggttgagctaagaggaggaaaatattttcc |
26490326 |
T |
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| Q |
256 |
gggagttgtggaagagtaaggcgc |
279 |
Q |
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| T |
26490327 |
gggaattgtggaagagtaaggcgc |
26490350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 280
Target Start/End: Complemental strand, 30635794 - 30635618
Alignment:
| Q |
103 |
ggttggaaggggtggtcctaaggtaccgggcggatatttgggtgtggaaaccggataaagagggagttttttccgttaattcttgctattttctacttcg |
202 |
Q |
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| T |
30635794 |
ggttggaaggggtggtcctaaagaaccagttggatatttgggtatggaaatcggataaagagagagttttt-ccattaattcttgttatttggtacttca |
30635696 |
T |
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| Q |
203 |
aaatttgaggcttttagaagatcagttgagctatgaggaggaagttattttccgggagttgtggaagagtaaggcgcc |
280 |
Q |
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| T |
30635695 |
aaatttgaggccattagaagatcggtttagctatgaggaggaagttatttttcaggagttgtggaatagtaaggcgcc |
30635618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 17778138 - 17778178
Alignment:
| Q |
141 |
tgggtgtggaaaccggataaagagggagttttttccgttaa |
181 |
Q |
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| T |
17778138 |
tgggtgtggaaatcggataaagatggggttttttccgttaa |
17778178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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