View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_17 (Length: 273)
Name: NF2779_low_17
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 32669204 - 32669040
Alignment:
| Q |
97 |
caagacaacacaacacttacaaagacttgcctcataggattctcctgttgaagcaccaaattcacttgcatttccaccctagatgcgtctcttcgacacc |
196 |
Q |
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| T |
32669204 |
caagacaatgcaacacttacaaagacttgcctcaaaggattatgctcttctagcacaaaaaccacttgcaattcctcccaagtcccgtctcttcgacacc |
32669105 |
T |
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| Q |
197 |
aaaacaacactagaacctgatcctagatacagaacattataataacgaactgctctgaagcttca |
261 |
Q |
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| T |
32669104 |
aatacaacaccagaacatgatcctaaaaacagaacattaaagtaacgaactgctatgaagcttca |
32669040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 16198875 - 16198791
Alignment:
| Q |
85 |
ttgatatacaaccaagacaacacaacacttacaaagacttgcctcataggattctcctgttgaagcaccaaattcacttgcatttc |
170 |
Q |
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| T |
16198875 |
ttgatatacaaccaagacaacacaacacttac-aagacttgcctcataggactctactgttgtaacaccaaatccacttgcatttc |
16198791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 16200814 - 16200771
Alignment:
| Q |
19 |
acttagtatgtgatcgtgataattaactcaatcttactacatga |
62 |
Q |
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| T |
16200814 |
acttagtatgtgatcgtgataattaactcaatcttactacatga |
16200771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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